1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtaatcaaattaggtaaacaacaattcttgattatgtgtgctctttagactattttccatttaattgaacttatttgattttcagGTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCTCCACTTGCTACCCATGTTGAAGAATACTTGCGTGTGGTCACATGTGCAC
species | Zea mays |
transcript | GRMZM5G861300_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTAAGCACAATGAAGCTGCTTCCATATGTGACAAAGTAGTTTTTAGTAAG GTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCTEST: gi|60354962|gb|DN221935.1|DN221935
genomic: CTAAGCACAATGAAGCTGCTTCCATATGTGACAAAGTAGTTTTTAGTAAGgtaatcaaat ... tgattttcagGTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCT
EST: CTAAGCACAATGAAGCTGCTTCCATATGTGACAAAGTAGTTTTTAGTAAG GTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCTEST: gi|32919588|gb|CF024400.1|CF024400
genomic: CTAAGCACAATGAAGCTGCTTCCATATGTGACAAAGTAGTTTTTAGTAAGgtaatcaaat ... tgattttcagGTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCT
EST: CTAAGCACAATGAAGCTGCTTCCATATGTGACAAAGTAGTTTTTAGTAAG GTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCTEST: gi|5901236|gb|AW042336.1|AW042336
genomic: CTAAGCACAATGAAGCTGCTTCCATATGTGACAAAGTAGTTTTTAGTAAGgtaatcaaat ... tgattttcagGTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCT
EST: GCACAATGAAGCTGCTT-CATATGTGACAAAGTAGTTTTTAGTAAG GTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCTEST: gi|60348658|gb|DN215631.1|DN215631
genomic: GCACAATGAAGCTGCTTCCATATGTGACAAAGTAGTTTTTAGTAAGgtaatcaaat ... tgattttcagGTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCT
EST: CTAAGCACAATGAAGCTGCTTCCATATGTGACAAAGTAGTTTTTAGTAAG GTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCTEST: gi|60348666|gb|DN215639.1|DN215639
genomic: CTAAGCACAATGAAGCTGCTTCCATATGTGACAAAGTAGTTTTTAGTAAGgtaatcaaat ... tgattttcagGTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCT
EST: CTAAGCACAATGAAGCTGCTTCCATATGTGACAAAGTAGTTTTTAGTAAG GTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCTEST: gi|32919644|gb|CF024456.1|CF024456
genomic: CTAAGCACAATGAAGCTGCTTCCATATGTGACAAAGTAGTTTTTAGTAAGgtaatcaaat ... tgattttcagGTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCT
EST: CTAAGCACAATGAAGCTGCTTCCATATGTGACAAAGTAGTTTTTAGTAAG GTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCT
genomic: CTAAGCACAATGAAGCTGCTTCCATATGTGACAAAGTAGTTTTTAGTAAGgtaatcaaat ... tgattttcagGTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCT
attatgtgtgctctttagactattttccatttaattgaacttatttgattttcagGTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCTCCACTTGCTACCCATGTTGAAGAATACTTGCGTGTGGTCACATGTGCAC
cttattt CT-rich tract
atttaattgaacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcaaattaggtaaacaacaattcttgattatgtgtgctctttagactattttccatttaattgaacttatttgattttcagGTGAAAGAGGGTCTTGGTGGAAATGTTAGAGTTATTTTATCTGGAGCTGCTCCACTTGCTACCCATGTTGAAGAATACTTGCGTGTGGTCACATGTGCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA