1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtgagttcatgtcttggttaatgtaacacgctagaacttcgctgactcttgtttttgcctccctattttgtccagCGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACAAGGAGGCAACACCAGCCGATGTTTTAAGGTCCTTCGTACACGGGCTCGT
species | Zea mays |
transcript | GRMZM5G846548_T03 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGACATGTTGGTGATTGC-AAAACAAAGATACCACTATGAAAACG CGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACAEST: gi|74233513|gb|DT641427.1|DT641427
genomic: TGACATGTTGGTGATTGCAAAAAC-AAGATACCACTATGAAAACGgtgagttcat ... ttttgtccagCGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
EST: GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACG CGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACAEST: gi|60397357|gb|DN230173.1|DN230173
genomic: GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACGgtgagttcat ... ttttgtccagCGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
EST: GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACG CGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACAEST: gi|5668511|gb|AI932026.1|AI932026
genomic: GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACGgtgagttcat ... ttttgtccagCGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
EST: GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACG CGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACAEST: gi|71419948|gb|DR804950.1|DR804950
genomic: GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACGgtgagttcat ... ttttgtccagCGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
EST: GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACG CGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
genomic: GTTGGTGATTGCAAAAACAAGATACCACTATGAAAACGgtgagttcat ... ttttgtccagCGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACA
atgtaacacgctagaacttcgctgactcttgtttttgcctccctattttgtccagCGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACAAGGAGGCAACACCAGCCGATGTTTTAAGGTCCTTCGTACACGGGCTCGT
cgctgac putative branch site (score: 3)
ctcttgtttttgcctc CT-rich tract
ttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttcatgtcttggttaatgtaacacgctagaacttcgctgactcttgtttttgcctccctattttgtccagCGAACTACTTTTTGCTGGATAAACAAGGCATCGTTTACGTTTTCATCCACAAGGAGGCAACACCAGCCGATGTTTTAAGGTCCTTCGTACACGGGCTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG