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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggagaaacattatgttttcttccttgctttctttaatttgactatgtgaactatgattttttctaccattttcctaccatcacaattcgaataccaaaaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG

Basic information

species Zea mays
transcript GRMZM5G846339_T02
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148929009|gb|EC874209.2|EC874209
EST:     TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAG                         GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
genomic: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
EST: gi|148950257|gb|EC895809.2|EC895809
EST:     TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAG                         GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
genomic: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
EST: gi|148945517|gb|EC890762.2|EC890762
EST:     GATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGGGAACCAG                         GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
genomic: GATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCT--GGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
EST: gi|211435723|gb|FL461646.1|FL461646
EST:     TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAG                         GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
genomic: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
EST: gi|211015300|gb|FL437092.1|FL437092
EST:     TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAG                         GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
genomic: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
EST: gi|12046797|gb|BF728936.1|BF728936
EST:     TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAG                         GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
genomic: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
EST: gi|211501409|gb|FL138835.1|FL138835
EST:     TCGATTCGCAGTGGATCGKTCACCAAGTGGTTCCTTCTCTGGGGAACCAG                         GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGGTGAGGGCGC
genomic: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGGGTGAGGGCGC
EST: gi|149070556|gb|EE158958.2|EE158958
EST:     TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAG                         GGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
genomic: TCGATTCGCAGTGGATCGTTCACCAAGTGGTTCCTTCTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
EST: gi|37399165|gb|CF636908.1|CF636908
EST:     CTCTGGGGAACCAG                         GGGCAGTCAGAAAACGGAAGGGTGCCATGGGAAGGG
genomic: CTCTGGGGAACCAGgtaaggagaa ... aaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgattttttctaccattttcctaccatcacaattcgaataccaaaaccttgcagGGGCAGTCAGAAAACGGAAGGGCGCCATGGGAAGGG
     tttttcta  TA-rich tract