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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgttgatcttattttgtttcctcctgtttagttgcctgaatgtcaaacttatatggagattttacctccttagGACATCGAAATGAATGAGAGTCGCAGGCGACAACTCCAGGATATGATTGAAGAGGCCATCAGTAACAATGGCAATAAAACCTACCTGCACATTCTCAGCC

Basic information

species Zea mays
transcript GRMZM5G837018_T02
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G837018_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os03g56260.1 (Oryza sativa), 3'ss of exon 13
---gtgttgatcttattttgtttcctcct----gtttagttgcctgaatgtcaaacttatatggagattttacctccttagGACATCGAAATGAATGAGAGTCGCAGGCGACAACTCCAGGATATGATTGAAGAGGCCATCAGTAACAATGGCAATAAAACCTACCTGCACATTCTCAGCC
    |  | || | | || |  |  ||||     ||| ||| ||| ||   |||||||||||||  |      ||   ||||| || ||| |||||||||||||||  || |||||||| |||||||| || || |||| ||||||||||||||| | ||||||||| ||||||||||| |
gtatttgtaatataaattcggattgtcctttgtttttggtttcctcaaaa-caaacttatatggcaaaca---ctatgtagGATATTGAACTGAATGAGAGTCGCAAACGTCAACTCCAAGATATGATCGAGGAAGCCACCAGTAACAATGGCAACAGAACCTACCTCCACATTCTCAGTC

upper sequence: GRMZM5G837018_T02 (Zea mays), 3'ss of exon 13
lower sequence: Vv07s0205g00140.t01 (Vitis vinifera), 3'ss of exon 13
gtgttgatcttatt-ttgtt-----tcctcctgtttagttgcctg-aatgtcaa--acttatatgga-gattttacctcct-tagGACATCGAAATGAATGAGAGTCGCAGGCGACAACTCCAGGATATGATTGAAGAGGCCATCAGTAACAATGGCAATAAAACCTACCTGCACATTCTCAGCC
||| ||  |||  |  || |     || |   | ||  |   ||  |||||||   |   ||||    |||||||  |  | ||||| ||||||   |||||||  |  ||  | || || ||  | |||||||| || ||||| ||||| |||||||| ||||||||| ||||||||||||| |
gtgatgccctttctactgctaggggtctttagggtttataatctctaatgtcatttagccatattattgattttatttattgtagGAAATCGAAGAAAATGAGAAGCAAAGATGCCAGCTTCAAAACATGATTGATGAAGCCATTAGTAATAATGGCAACAAAACCTACTTGCACATTCTCAGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctcctgtttagttgcctgaatgtcaaacttatatggagattttacctccttagGACATCGAAATGAATGAGAGTCGCAGGCGACAACTCCAGGATATGATTGAAGAGGCCATCAGTAACAATGGCAATAAAACCTACCTGCACATTCTCAGCC
                                         ttttacctcctt  CT-rich tract
                          aaacttatat  TA-rich tract