1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtaagtagccctgcacgatacttccagctcttggcacatttgtttgcgtactgtaaaactgactgtacttggtaacatgttcttgcagGCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAACAAAGCACATATACCAGAGGACGTCCAGTTGATATATGCCAGTTCTGAGG
species | Zea mays |
transcript | GRMZM5G836588_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCA GCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAACEST: gi|211075806|gb|FL464165.1|FL464165
genomic: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCAgtaagtagcc ... gttcttgcagGCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAAC
EST: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCA GCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAACEST: gi|4621446|gb|AI612279.1|AI612279
genomic: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCAgtaagtagcc ... gttcttgcagGCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAAC
EST: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCA GCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAACEST: gi|148929297|gb|EC875052.2|EC875052
genomic: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCAgtaagtagcc ... gttcttgcagGCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAAC
EST: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCA GCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAACEST: gi|78125404|gb|DV543788.1|DV543788
genomic: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCAgtaagtagcc ... gttcttgcagGCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAAC
EST: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCA GCACGATCTGGAGGTGAATGTTGGGAGGGGCCTAATTGTAGACCCAAGAACEST: gi|94478486|gb|EB707444.1|EB707444
genomic: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCAgtaagtagcc ... gttcttgcagGCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAAC
EST: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCA GCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAACEST: gi|211124589|gb|FL474104.1|FL474104
genomic: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCAgtaagtagcc ... gttcttgcagGCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAAC
EST: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCA GCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAACEST: gi|76286117|gb|DV025685.1|DV025685
genomic: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCAgtaagtagcc ... gttcttgcagGCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAAC
EST: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCA GCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAAC
genomic: TTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCAgtaagtagcc ... gttcttgcagGCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAAC
gcacatttgtttgcgtactgtaaaactgactgtacttggtaacatgttcttgcagGCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAACAAAGCACATATACCAGAGGACGTCCAGTTGATATATGCCAGTTCTGAGG
tggtaac putative branch site (score: 11)
tgttctt CT-rich tract
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtagccctgcacgatacttccagctcttggcacatttgtttgcgtactgtaaaactgactgtacttggtaacatgttcttgcagGCACGATCTGGAGGTGAATGGTGGGAGGGGCCTAATTGTAGACCCAAGAACAAAGCACATATACCAGAGGACGTCCAGTTGATATATGCCAGTTCTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA