1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gttagttctcgcactagaacacagtttctactattttactaaaatgtgcagtaaatcttatcggcacgatttcctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAGGGTCCGTGAAGGCTCCAAACTGCGGAAGATCGACTAACAATCAGCTCTT
species | Zea mays |
transcript | GRMZM5G833124_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTG GAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAGEST: gi|32849291|gb|CD988972.1|CD988972
genomic: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTGgttagttctc ... ctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAG
EST: ACTTGAACCTG GAGCGTCAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAGEST: gi|31363448|gb|CD447805.1|CD447805
genomic: ACTTGAACCTGgttagttctc ... ctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAG
EST: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTG GAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAGEST: gi|16916759|gb|BM072978.1|BM072978
genomic: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTGgttagttctc ... ctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAG
EST: GCACCAAATTGTCATGAGTCCTGATCCGGCAGGAACAGTACTTGAACCTG GAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAGEST: gi|32846021|gb|CD985702.1|CD985702
genomic: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTGgttagttctc ... ctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAG
EST: ACTTGAACCTG GAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAGEST: gi|17931896|gb|BM268856.1|BM268856
genomic: ACTTGAACCTGgttagttctc ... ctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAG
EST: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTG GAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAGEST: gi|84977310|gb|DW475732.1|DW475732
genomic: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTGgttagttctc ... ctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAG
EST: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTG GAGCGTTAGATCGCAACAACCACCATGACAGGGGG-TGCTGACTCAGGA-GEST: gi|37374924|gb|CF623866.1|CF623866
genomic: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTGgttagttctc ... ctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAG
EST: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTG GAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAGEST: gi|84969714|gb|DW468143.1|DW468143
genomic: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTGgttagttctc ... ctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAG
EST: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTG GAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAGEST: gi|32937580|gb|CF042399.1|CF042399
genomic: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTGgttagttctc ... ctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAG
EST: GCACCAAATTGTCATGAGTCCTGATCCTGAAGGAACAGTACTTGAACCTG GAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAGEST: gi|93281684|gb|EB673948.1|EB673948
genomic: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTGgttagttctc ... ctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAG
EST: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTG GAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAGEST: gi|76016960|gb|DT944130.1|DT944130
genomic: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTGgttagttctc ... ctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAG
EST: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTG GAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAG
genomic: GCACCAAATTGTCATGAGTCCTGATCCTGCAGGAACAGTACTTGAACCTGgttagttctc ... ctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAG
tactattttactaaaatgtgcagtaaatcttatcggcacgatttcctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAGGGTCCGTGAAGGCTCCAAACTGCGGAAGATCGACTAACAATCAGCTCTT
tactaaa putative branch site (score: 212)
tttcctgt putative PPT
ttttactaaaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagttctcgcactagaacacagtttctactattttactaaaatgtgcagtaaatcttatcggcacgatttcctgtatgcagGAGCGTTAGATCGCAACAACCACCATGACAGGGGGGTGCTGACTCAGGAAGGGTCCGTGAAGGCTCCAAACTGCGGAAGATCGACTAACAATCAGCTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC