1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ccttcctaacaagattgttgtttatcccacataccgttatatacttatatagccacaagatttgcattcagcactctaaagcatgtacaaaaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCACTACTCCCACCCACCACTCGTCGAGAGGCTGCAAGCTCTTGAAGATTCAG
species | Zea mays |
transcript | GRMZM5G813909_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG GAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|18165861|gb|BM335700.1|BM335700
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAGgtaaccattt ... aaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG GAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|32935179|gb|CF039991.1|CF039991
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAGgtaaccattt ... aaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG GAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|76293280|gb|DV032848.1|DV032848
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAGgtaaccattt ... aaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG GAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|32914225|gb|CF019037.1|CF019037
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAGgtaaccattt ... aaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG GAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|32914224|gb|CF019036.1|CF019036
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAGgtaaccattt ... aaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG GAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|71761327|gb|DR959264.1|DR959264
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAGgtaaccattt ... aaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG GAGGAGAACTTGTTTGCGATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|32909800|gb|CF014612.1|CF014612
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAGgtaaccattt ... aaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG GAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|211004566|gb|FL452982.1|FL452982
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAGgtaaccattt ... aaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG GAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|71767567|gb|DR965504.1|DR965504
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAGgtaaccattt ... aaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG GAGGAGAACTTGTTTGCGATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|78114997|gb|DV533385.1|DV533385
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAGgtaaccattt ... aaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG GAGGAGAACTTGTTTGCGATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|71758092|gb|DR956029.1|DR956029
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAGgtaaccattt ... aaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG GAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|6095666|gb|AW120333.1|AW120333
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAGgtaaccattt ... aaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG GAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCACEST: gi|50322420|gb|CO517546.1|CO517546
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAGgtaaccattt ... aaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
EST: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG GAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
genomic: AGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAGgtaaccattt ... aaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCAC
tatatagccacaagatttgcattcagcactctaaagcatgtacaaaaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCACTACTCCCACCCACCACTCGTCGAGAGGCTGCAAGCTCTTGAAGATTCAG
ctctaaa putative branch site (score: 86)
atgtacaaaaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttcctaacaagattgttgtttatcccacataccgttatatacttatatagccacaagatttgcattcagcactctaaagcatgtacaaaaaatttcagGAGGAGAACTTGTCTGCGATGAACACCGATCCTTGGTATTCGGCATATCACTACTCCCACCCACCACTCGTCGAGAGGCTGCAAGCTCTTGAAGATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - -aacaaga
- - - - - - - -tgttgtt
- - - - - - - - - - - - - -cacatac
- - - - - - - - - - - - - - - - - - - - - - - - - -gccacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgta