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...atgttccggttgctggtcagataaatttcatcgtcttagtaggctcaatggaaaactagtatcgaagttcatgatattgttgtatttatcattcttccagGATCTTGATTCACGTTGCGAACAGCTCATCAAGGAAGAGTTTGGTATGGAGTGCAATTTTGATGTTGTAGATGCTGTAAAGAAGCTAGAGAAACTCGGCA
species | Zea mays |
transcript | GRMZM2G527387_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTATCATTTCTTACTACATTTTGATGGAGCAAGGAAAGGCCACTGTACAG GATCTTGATTCACGTTGCGAACAGCTCATCAAGGAAGAGTTTGGTATGGAGEST: gi|33285620|gb|CF075415.1|CF075415
genomic: TTATCATTTCTTACTACATTTTGATGGAGCAAGGAAAGGCCACTGTACAGgttagcttgt ... attcttccagGATCTTGATTCACGTTGCGAACAGCTCATCAAGGAAGAGTTTGGTATGGAG
EST: TTATCATTTCTTACTACATTTTGATGGAGCA-GGNAAGGCCNCTGTACAG GATCTTGATCC-CGTTGCGAACAGCTCATCAEST: gi|211103865|gb|FL454845.1|FL454845
genomic: TTATCATTTCTTACTACATTTTGATGGAGCAAGGAAAGGCCACTGTACAGgttagcttgt ... attcttccagGATCTTGATTCACGTTGCGAACAGCTCATCA
EST: CATTTTGATGGAGCAAGGAAAGGCCACTGTACAG GATCTTGATTCACGTTGCGAACAGCTCATCAAGGAAGAGTTTGGTATGGAGEST: gi|45568220|gb|CK985961.1|CK985961
genomic: CATTTTGATGGAGCAAGGAAAGGCCACTGTACAGgttagcttgt ... attcttccagGATCTTGATTCACGTTGCGAACAGCTCATCAAGGAAGAGTTTGGTATGGAG
EST: TTATCATTTCTTACTACATTTTGATGGAGCAAGGAAAGGCCACTGTACAG GATCTTGATTCACGTTGCGAACAGCTCATCAAGGAAGAGTTTGGTATGGAG
genomic: TTATCATTTCTTACTACATTTTGATGGAGCAAGGAAAGGCCACTGTACAGgttagcttgt ... attcttccagGATCTTGATTCACGTTGCGAACAGCTCATCAAGGAAGAGTTTGGTATGGAG
caatggaaaactagtatcgaagttcatgatattgttgtatttatcattcttccagGATCTTGATTCACGTTGCGAACAGCTCATCAAGGAAGAGTTTGGTATGGAGTGCAATTTTGATGTTGTAGATGCTGTAAAGAAGCTAGAGAAACTCGGCA
tttatcattcttcc CT-rich tract
atattgttgtatttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttccggttgctggtcagataaatttcatcgtcttagtaggctcaatggaaaactagtatcgaagttcatgatattgttgtatttatcattcttccagGATCTTGATTCACGTTGCGAACAGCTCATCAAGGAAGAGTTTGGTATGGAGTGCAATTTTGATGTTGTAGATGCTGTAAAGAAGCTAGAGAAACTCGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - gttgctg
- - - - - - - - -cagataaa
- - - - - - - - - - - - - - - - - - - - - - - - - gaaaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgta