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...tggcgtctgaacaccttggaatgtttttttcctcctatcttgcaacatgcaaacatcggtaggacatggtacattggtcttatttgtgctgtacatgcagGACTACATTGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCGGCCTACATCTGCGGTGCCGGGGAGGAGCTGCTGGCCCTCCGAAAGAAGC
species | Zea mays |
transcript | GRMZM2G454952_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGAAGACGCCCGTTAAAAACTTCTTCCTCTCTGGATCTTACACGAAACAG GACTACATTGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCGEST: gi|7135365|gb|AW498049.1|AW498049
genomic: AGAAGACGCCCGTTAAAAACTTCTTCCTCTCTGGATCTTACACGAAACAGgtattgttgt ... gtacatgcagGACTACATTGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCG
EST: AGAAGACGCCCGTTAAAAACTTCTTCCTCTCTGGATCTTACACGAAACAG GACTACATCGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCGEST: gi|78109524|gb|DV527940.1|DV527940
genomic: AGAAGACGCCCGTTAAAAACTTCTTCCTCTCTGGATCTTACACGAAACAGgtattgttgt ... gtacatgcagGACTACATTGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCG
EST: AGAAGACGCCCGTTAAAAACTTCTTCCTCTCTGGATCTTACACGAAACAG GACTACATTGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCGEST: gi|7137692|gb|AW499222.1|AW499222
genomic: AGAAGACGCCCGTTAAAAACTTCTTCCTCTCTGGATCTTACACGAAACAGgtattgttgt ... gtacatgcagGACTACATTGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCG
EST: AGAAGACGCCCGTTAAAAACTTCTTCCTCTCTGGATCTTACACGAAACAG GACTACATCGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCGEST: gi|211285365|gb|FL459085.1|FL459085
genomic: AGAAGACGCCCGTTAAAAACTTCTTCCTCTCTGGATCTTACACGAAACAGgtattgttgt ... gtacatgcagGACTACATTGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCG
EST: AGAAGACGCCCGTTAAAAACTTCTTCCTCTCTGGATCTTACACGAAACAG GACTACATTGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCGEST: gi|110533071|gb|EE037251.1|EE037251
genomic: AGAAGACGCCCGTTAAAAACTTCTTCCTCTCTGGATCTTACACGAAACAGgtattgttgt ... gtacatgcagGACTACATTGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCG
EST: AGAAGACGCCCGTTAAAAACTTCTTCCTCTTTGGATCTTACACGAAACAG GACTACATTGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCG
genomic: AGAAGACGCCCGTTAAAAACTTCTTCCTCTCTGGATCTTACACGAAACAGgtattgttgt ... gtacatgcagGACTACATTGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCG
catgcaaacatcggtaggacatggtacattggtcttatttgtgctgtacatgcagGACTACATTGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCGGCCTACATCTGCGGTGCCGGGGAGGAGCTGCTGGCCCTCCGAAAGAAGC
tcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggcgtctgaacaccttggaatgtttttttcctcctatcttgcaacatgcaaacatcggtaggacatggtacattggtcttatttgtgctgtacatgcagGACTACATTGACAGCATGGAAGGAGCAACTCTCTCCGGCAGGCGAACGTCGGCCTACATCTGCGGTGCCGGGGAGGAGCTGCTGGCCCTCCGAAAGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - ctgaaca
- - - - - - - - - - -tgttttt
- - - - - - - - - - - - - - - - - - -tcttgca
- - - - - - - - - - - - - - - - - - - - - - acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggacatg