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gtatgaagcaaaaaatatttctacagattttctattctagctgcctcggagactaattgcaacatcaaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCATCCGCAAACACAGAGGGAAGTGAAGGAGAGAATTGGCTTAAAAG
species | Zea mays |
transcript | GRMZM2G450055_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGATCTAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAG CGAATAGCAAGEST: gi|22490113|gb|BU050036.1|BU050036
genomic: TTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAG
EST: TTGATCTAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAG CGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCAEST: gi|22473134|gb|BU037614.1|BU037614
genomic: TTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCA
EST: TTGATCTAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAG CGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCAEST: gi|21760083|gb|BQ635624.1|BQ635624
genomic: TTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCA
EST: TTGATCTAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAG CGAATAGCAAGCCACATTATCAAGGTGCATGCCAGCGGTGCAGCAGCGTCAEST: gi|211542715|gb|FK958382.1|FK958382
genomic: TTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCA
EST: TTGATCTAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAG CGAATAGCAAGEST: gi|22545894|gb|BU098253.1|BU098253
genomic: TTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAG
EST: TTGATCTAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAG CGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCA
genomic: TTGATCAAATCTTTATTGTCAAAGATATCAGAATGTATGACCAAGATAAGgtatgaagca ... caaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCA
ctacagattttctattctagctgcctcggagactaattgcaacatcaaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCATCCGCAAACACAGAGGGAAGTGAAGGAGAGAATTGGCTTAAAAG
gactaat putative branch site (score: 12)
attttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaagcaaaaaatatttctacagattttctattctagctgcctcggagactaattgcaacatcaaaatacagCGAATAGCAAGCCACATTATCAAGGTGCATGCCAGTGGTGCAGCAGCGTCATCCGCAAACACAGAGGGAAGTGAAGGAGAGAATTGGCTTAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA