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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatcagttaagaacatcttatagtgcttattaatgtcatatatacataaacatgctttactattatttgcatttctgataacagcagctgtaatttcagGAGAGGAAAAGTATAAGACCAGCATTCTCTGGAGAACGTATATATGGGGGAGTATTGCTTGCTATATGTACAAATGATTTCATTTGTTTTTATGACTGGG

Basic information

species Zea mays
transcript GRMZM2G443953_T03
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G443953_T03 (Zea mays), 3'ss of exon 13
lower sequence: Vv11s0016g04180.t01 (Vitis vinifera), 3'ss of exon 12
ttatcagttaagaacatcttatagtgcttattaatgtcatatatacataaacatgctttactatt---atttgcatttctgataacagcagctgtaat-ttcagGAGAGGAAAAGTATAAGACCAGCATTCTCTGGAGAACGTATATATGGGGGAGTATTGCTTGCTATATGTACAAATGATTTCATTTGTTTTTATGACTGGG
     |    |  ||   |   |||  || |  |  |   |   | ||||   |  |      |    | ||| ||      |||  |  |  | | | ||||||| | ||| | |||  ||||| | || ||||  ||||  || ||||| || | | | || || |||||  ||||||| ||||||||||||||||||||||
----aaaaggaatactcttctaagtcattgtggaaatgcgactgatataattcttttcctgcctgggaaattgaatggagtttaatggtggtggcattcttcagGAAAAGAAGAATATTCGACCAACCTTTTCTGCTGAACACATTTATGGAGGGGCACTTCTGGCGATATGCTCAAATGACTTCATTTGTTTTTATGACTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|160481610|gb|EY254442.1|EY254442
EST:     CTGCAAGGGAAAGCACATCAAAAATAAAGATCTACAGTAAAAACTTTCAG                         GAGAGGAAAAGTATAAGACCAGCATTCTCTGGAGAACGTATATATGGGGGA
genomic: CTGCAAGGGAAAGCACATCAAAAATAAAGATCTACAGTAAAAACTTTCAGgtttgctctt ... gtaatttcagGAGAGGAAAAGTATAAGACCAGCATTCTCTGGAGAACGTATATATGGGGGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataaacatgctttactattatttgcatttctgataacagcagctgtaatttcagGAGAGGAAAAGTATAAGACCAGCATTCTCTGGAGAACGTATATATGGGGGAGTATTGCTTGCTATATGTACAAATGATTTCATTTGTTTTTATGACTGGG
                               tgataac  putative branch site (score: 2)
           tttactattattt  TA-rich tract