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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaactggtgtttgcttttttacgaccttctataacattataatatagtcggggggggggggggggggagttttacggctagctgattcgcttggggtactcccttaattatgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTG

Basic information

species Zea mays
transcript GRMZM2G432128_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G432128_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os01g46610.1 (Oryza sativa), 3'ss of exon 13
gtacaactggtgtttgcttttttacgaccttctataacattataatata-gtcggggggggggggggggggagttttacggctagctgattcgcttggggtac-tcccttaattatgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTG
                          |||    ||| |    ||    | ||||      |   |||   |  | |    | | | |||||  ||   || |  | |  |  || ||| | ||||||||||||| |||||||| |||||||| || ||||| || || ||||| || |||||||||||||  |||||||| || ||||||||||| ||||| || 
-------------------------taccgaaaatagcgaagtagctcatgtcgttctatgcttgggtctggctctctgagttggatgattaactcatggcaaatgcactgtttgtgcactgcagGGCAAAGCTTGACGACAATGCTAGACTTCTTGACTTTGCACTAAAACTTGAAGCTGCTTGCGTTGGAACCGTGGAATCTGGGAAGATGACCAAAGACCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60342210|gb|DN209183.1|DN209183
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|213178508|gb|FM194011.1|FM194011
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTCGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|13198143|gb|BG354174.1|BG354174
EST:     TGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGTCAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: TGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|211320314|gb|FL454033.1|FL454033
EST:     CGWACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCG
genomic: CGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTG-CCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCG
EST: gi|76286555|gb|DV026123.1|DV026123
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCCCAG                         GGCAAAGCTCGACGACAACGCTAGACTACTTGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|148937600|gb|EC881790.2|EC881790
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|60338834|gb|DN205807.1|DN205807
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|37377043|gb|CF625092.1|CF625092
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|8577413|gb|BE130050.1|BE130050
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|21760011|gb|BQ635552.1|BQ635552
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTC
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTC
EST: gi|60352624|gb|DN219597.1|DN219597
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|50338699|gb|CO533825.1|CO533825
EST:     AAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: AAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|211106972|gb|FL115259.1|FL115259
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|116823985|gb|EC867562.1|EC867562
EST:     ACGACCAGCATTGCTTCGATCTTTGCATGGCCAAGAGGACTTGCCCACAG                         GGCAAAGCGCGAACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCG
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCG-ACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCG
EST: gi|67010786|gb|CO439535.1|CO439535
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|211106971|gb|FL115258.1|FL115258
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|32912487|gb|CF017299.1|CF017299
EST:     GCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: GCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|61119106|gb|DN560067.1|DN560067
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAA
EST: gi|116821966|gb|EC865325.1|EC865325
EST:     GGACTTGCCCACAG                         GTC-AAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: GGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|40303174|gb|CK347561.1|CK347561
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTTGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|33092418|gb|CF052412.1|CF052412
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|60352979|gb|DN219952.1|DN219952
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAA
EST: gi|37377787|gb|CF625533.1|CF625533
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|21891601|gb|BQ744814.1|BQ744814
EST:     CCGAACAGCATTGCTTCGATCTTTGCATGGCCAAGAGGACTTGCCCCCAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|5895722|gb|AW036968.1|AW036968
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCNCAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|32849367|gb|CD989048.1|CD989048
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|60343928|gb|DN210901.1|DN210901
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAA
EST: gi|67023195|gb|CO451944.1|CO451944
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAAGACTTGCCCACAG                         GGCANAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|33098319|gb|CF058279.1|CF058279
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|60358113|gb|DN225086.1|DN225086
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|67025371|gb|CO454120.1|CO454120
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|148957373|gb|EC903423.2|EC903423
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTTTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|74237579|gb|DT645493.1|DT645493
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|60346852|gb|DN213825.1|DN213825
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|21706316|gb|BQ635352.1|BQ635352
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|60347229|gb|DN214202.1|DN214202
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|21891602|gb|BQ744815.1|BQ744815
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAG
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAG
EST: gi|67019645|gb|CO448394.1|CO448394
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
EST: gi|8401314|gb|BE056948.1|BE056948
EST:     ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAG                         GGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA
genomic: ACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 425

GCACGGTTACCCGTCATTTCCGTGTCCACCAGAAAGGAGGCGAAACCAGCACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTG


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 1366

GCACGGTTACCCGTCATTTCCGTGTCCACCAGAAAGGAGGCGAAACCAGCACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTG


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 930

GCACGGTTACCCGTCATTTCCGTGTCCACCAGAAAGGAGGCGAAACCAGCACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTG


Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 1938

GCACGGTTACCCGTCATTTCCGTGTCCACCAGAAAGGAGGCGAAACCAGCACGAACAGCATTGCTTCGATCTTTGCATGGACAAGAGGACTTGCCCACAGgtacaactgg ... tgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggagttttacggctagctgattcgcttggggtactcccttaattatgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTG
                                    ccttaat  putative branch site (score: 1938)
                                      ttaattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacaactggtgtttgcttttttacgaccttctataacattataatatagtcggggggggggggggggggagttttacggctagctgattcgcttggggtactcccttaattatgcgccgcagGGCAAAGCTCGACGACAACGCTAGACTACTCGACTTCGCTCTCAAACTCGAGGCTGCTTGCGTTGAGACCGTGGAGTCCGGGAAGATGACTAAAGATCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG