Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcgcctggtcggtcctgtcggtcgactagctggtcgcccgacttgaaatcagtgtacatgaaaccaacaagcactttttatctagttcttccttgacaagATTTTACTTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCA

Basic information

species Zea mays
transcript GRMZM2G426275_T04
intron # 13
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G426275_T04 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os02g58590.1 (Oryza sativa), 3'ss of exon 13
gcgcctggtcggtcctgtcggtcgactagctggtcgcccgacttgaaatcagtgtacatgaaaccaacaagcactttttatctagttcttccttgacaagATTTTACTTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCA-
                 |   |  ||| | ||    |     || | || ||  || |  | |    |   ||  |   || || ||||||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||  || | |||||||| || ||||||||| | || |||||||||||||||||| | || 
----------------atatctttact-gttgcctactaatttttatattagcatatacaatattttc---catctaccatatatttcttccttaacaagactttacTTATTGGGATGACTGGGTGAGGCTAAAAGAGGTACACAGAGACCGGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACAT

upper sequence: GRMZM2G426275_T04 (Zea mays), 3'ss of exon 13
lower sequence: AT4G38240.3 (Arabidopsis thaliana), 3'ss of exon 13
--------------------gcgcctggtcggtcctgtcggtcgactagctggtcgcccgacttgaaatcagtgtacatgaaaccaacaagcactttttatctagttcttccttgacaagATTTTACTTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCA-
                            |   | || ||  ||     |    | |   |||      | | |    |  |||  || |        ||    ||   || ||| ||||   |  ||||| |||||||||||| |||| ||||||||    |||  |   || |||||||| || |||||| | ||||||||||||||||||||  | || 
gtggccaaaggcatatccttatatgcttttttttctttcaatctcgatgactatagtttgacgcttcttaaattctaaaaaaaaaaatagtttgacgtttctaagacttttcttaacaaatatccacttactgggatgattggctgagACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAATTTTGGTGAACAT

upper sequence: GRMZM2G426275_T04 (Zea mays), 3'ss of exon 13
lower sequence: AT4G38240.1 (Arabidopsis thaliana), 3'ss of exon 13
--------gcgcctggtcggtcctgtcggtcgactagctggtcgcccgacttgaaatcagtgtacatgaaaccaacaagcactttttatctagttcttccttgacaagATTTTACTTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCA-
                |   | || ||  ||     |    | |   |||      | | |    |  |||  || |        ||    ||   || ||| ||||   |  ||||| |||||||||||| |||| ||||||||    |||  |   || |||||||| || |||||| | ||||||||||||||||||||  | || 
atatccttatatgcttttttttctttcaatctcgatgactatagtttgacgcttcttaaattctaaaaaaaaaaatagtttgacgtttctaagacttttcttaacaaatatccacTTACTGGGATGATTGGCTGAGACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAATTTTGGTGAACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatcagtgtacatgaaaccaacaagcactttttatctagttcttccttgacaagATTTTACTTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCA
                                           ttccttgac  putative branch site 
                            ctttttatctagttct  CT-rich tract
                             tttttatcta  TA-rich tract