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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcggtcctgtcggtcgactagctggtcgcccgacttgaaatcagtgtacatgaaaccaacaagcactttttatctagttcttccttgacaagattttacTTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCAT

Basic information

species Zea mays
transcript GRMZM2G426275_T01
intron # 13
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G426275_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os02g58590.1 (Oryza sativa), 3'ss of exon 13
gtcggtcctgtcggtcgactagctggtcgcccgacttgaaatcagtgtacatgaaaccaacaagcactttttatctagttcttccttgacaagattttacTTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCAT
          |   |  ||| | ||    |     || | || ||  || |  | |    |   ||  |   || || ||||||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||  || | |||||||| || ||||||||| | || |||||||||||||||||| | |||
---------atatctttact-gttgcctactaatttttatattagcatatacaatattttc---catctaccatatatttcttccttaacaagactttacTTATTGGGATGACTGGGTGAGGCTAAAAGAGGTACACAGAGACCGGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACAT

upper sequence: GRMZM2G426275_T01 (Zea mays), 3'ss of exon 13
lower sequence: AT4G38240.3 (Arabidopsis thaliana), 3'ss of exon 13
---------------------------gtcggtcctgtcggtcgactagctggtcgcccgacttgaaatcagtgtacatgaaaccaacaagcactttttatctagttcttccttgacaagattttacTTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCAT
                            |   | || ||  ||     |    | |   |||      | | |    |  |||  || |        ||    ||   || ||| ||||   |  ||||| |||||||||||| |||| ||||||||    |||  |   || |||||||| || |||||| | ||||||||||||||||||||  | |||
gtggccaaaggcatatccttatatgcttttttttctttcaatctcgatgactatagtttgacgcttcttaaattctaaaaaaaaaaatagtttgacgtttctaagacttttcttaacaaatatccacttactgggatgattggctgagACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAATTTTGGTGAACAT

upper sequence: GRMZM2G426275_T01 (Zea mays), 3'ss of exon 13
lower sequence: AT4G38240.1 (Arabidopsis thaliana), 3'ss of exon 13
---------------gtcggtcctgtcggtcgactagctggtcgcccgacttgaaatcagtgtacatgaaaccaacaagcactttttatctagttcttccttgacaagattttacTTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCAT
                |   | || ||  ||     |    | |   |||      | | |    |  |||  || |        ||    ||   || ||| ||||   |  ||||| |||||||||||| |||| ||||||||    |||  |   || |||||||| || |||||| | ||||||||||||||||||||  | |||
atatccttatatgcttttttttctttcaatctcgatgactatagtttgacgcttcttaaattctaaaaaaaaaaatagtttgacgtttctaagacttttcttaacaaatatccacTTACTGGGATGATTGGCTGAGACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAATTTTGGTGAACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtacatgaaaccaacaagcactttttatctagttcttccttgacaagattttacTTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCAT
                                    ttccttgac  putative branch site 
                      tttttatcta  TA-rich tract