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gtaggaatctgcttcaagacctcctgtttgcgtgccattagttaatcggggttcttatgcttttcagATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATCCTATATGTGATTTCACGGTACTTTTTACCGGCTTTGAAGGAACAAGGCA
species | Zea mays |
transcript | GRMZM2G417217_T03 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCCAGCTACTACAGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAG ATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATCEST: gi|67016820|gb|CO445569.1|CO445569
genomic: CTCTTCCAGCTACTACAGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAGgtaggaatct ... tgcttttcagATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATC
EST: AGCCACTGTTTGTGCCCTTCACGCCTTCCTCAAG A-GGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATCEST: gi|24769979|gb|CA405108.1|CA405108
genomic: AGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAGgtaggaatct ... tgcttttcagATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATC
EST: CTCTTCCAGCTACTACAGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAG ATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATCEST: gi|149076572|gb|EE165207.2|EE165207
genomic: CTCTTCCAGCTACTACAGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAGgtaggaatct ... tgcttttcagATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATC
EST: CTCTTCCAGCTACTACAGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAG ATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATC
genomic: CTCTTCCAGCTACTACAGCCACTGCTTGTGCCCTTCACGCCTTCCTCAAGgtaggaatct ... tgcttttcagATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATC
ttcaagacctcctgtttgcgtgccattagttaatcggggttcttatgcttttcagATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATCCTATATGTGATTTCACGGTACTTTTTACCGGCTTTGAAGGAACAAGGCA
agttaat putative branch site (score: 15)
ttcttatgcttttc putative PPT
attagttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaatctgcttcaagacctcctgtttgcgtgccattagttaatcggggttcttatgcttttcagATGGCTGGTTTTGCACTTCACAAGAAATATGGATCGCAGTTCATGAAAATCCTATATGTGATTTCACGGTACTTTTTACCGGCTTTGAAGGAACAAGGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA