Sequence
atgc intronic sequence ATGC exonic sequencegtatatatgtatgctgctggtttatccactttcattacagtgtggggtctggaatacagcttgagaagtaccaacgctgcgcttgttttgttttgttttgttttgtttttgcagGTCATCTTCTTCACCGACCCTATGGACGAGTACCTGATGCAGTACCTGATGGACTACGAGGACAGGAAGTTCCAGAACGTGTCCAAGGAGGGCCTGAAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G399073_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os06g50300.1 (Oryza sativa), 3'ss of exon 13
gtatatatgtatgctgctggtttatccactttcattacagtgtggggtctggaatacagct--tgagaagtaccaacgctgcgcttgttttgttttgttttgttttgtttttgcagGTCATCTTCTTCACCGACCCTATGGACGAGTACCTGATGCAGTACCTGATGGACTACGAGGACAGGAAGTTCCAGAACGTGTCCAAGGAGGGCCTGAAGC
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--------gggtactgc-accacatttattgctttttta-tg-agctcctccaatagaattactctggatccctggagcttaactaatact--tttgttatcttttgtt---gcagGTTATCTACTTCACTGACCCTGTTGACGAGTACTTGATGCAATACCTCATGGACTACGAGGACAAGAAGTTCCAGAACGTCTCCAAGGAGGGTCTCAAAC
upper sequence: GRMZM2G399073_T02 (Zea mays), 3'ss of exon 15
lower sequence: GLYMA14G40320.1 (Glycine max), 3'ss of exon 13
--------------------------gtatatatgtatgctgctggtttatccactttcattacagtgtggggtctggaatacagcttgagaagtaccaacgctgcgcttgttttgttttgttttgttttgtttttgc---agGTCATCTTCTTCACCGACCCTATGGACGAGTACCTGATGCAGTACCTGATGGACTACGAGGACAGGAAGTTCCAGAACGTGTCCAAGGAGGGCCTGAAGC
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gtacaatttaaattgtttgatttttattacaagtatat-ttgctctattatttgttcttttaaaaacatttgtctttctattctgct-gagagatgatgatttaatgtct-tctaaatgtattttcttttgaatttgctacagGTTATTTTCTTCACGGATCCAGTTGATGAGTACTTGATGCAATACCTGATGGATTATGAAGACAAGAAGTTCCAAAATGTGTCCAAGGAGGGTTTGAAAC
upper sequence: GRMZM2G399073_T02 (Zea mays), 3'ss of exon 15
lower sequence: GLYMA17G37820.1 (Glycine max), 3'ss of exon 13
------------------gtatatatgtatgctgctggtttatccactttcattacagtgtggggtctggaatacagcttgagaagtaccaacgctgcgcttgttttgttttgttttgttttgtttt--tgcagGTCATCTTCTTCACCGACCCTATGGACGAGTACCTGATGCAGTACCTGATGGACTACGAGGACAGGAAGTTCCAGAACGTGTCCAAGGAGGGCCTGAAGC
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ggtgcaatttaaattgtttgatttttattatttgctctattattttgttctctaaaaacattagcctttctattctgct-gaggggtgatgatttaatgtcttctaagcgtattttcttttcaatttcctacaGGTTATTTTCTTCACGGATCCAGTTGATGAATACTTGATGCAATACCTGATGGATTATGAAGACAAGAAGTTCCAAAATGTGTCCAAGGAGGGTTTGAAA-
upper sequence: GRMZM2G399073_T02 (Zea mays), 3'ss of exon 15
lower sequence: AT4G24190.1 (Arabidopsis thaliana), 3'ss of exon 13
gtatatatgtatgctgctggtttatccactttcattacagtgtggggtctggaatacagcttgagaagtaccaacgctgcgcttgttttgttttgttttgttttgtttttgcagGTCATCTTCTTCACCGACCCTATGGACGAGTACCTGATGCAGTACCTGATGGACTACGAGGACAGGAAGTTCCAGAACGTGTCCAAGGAGGGCCTGAAGC
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---------------------------gtttgcattgca-cacgaat-----aattcttctttaaatg-atctccaactcgcataacacgttctcat---acttgtgttcccagGTCATCTTCTTCACAGACCCAGTTGATGAATACTTGATGCAATACCTGATGGATTACGAAGACAAAAAGTTCCAGAATGTGTCCAAGGAAGGACTGAAGG
upper sequence: GRMZM2G399073_T02 (Zea mays), 3'ss of exon 15
lower sequence: Vv18s0001g14500.t01 (Vitis vinifera), 3'ss of exon 13
------gtatatatgtatgctgctggtttatccactttcattacagtgtggggtctggaatacagcttgagaagtaccaacgctgcgctt----gttttgttttgtttt---gttttgtttttgcagGTCATCTTCTTCACCGACCCTATGGACGAGTACCTGATGCAGTACCTGATGGACTACGAGGACAGGAAGTTCCAGAACGTGTCCAAGGAGGGCCTGAAGC
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gtatgattggaaaagataactacttgcttttcaaccgtccttgattagtctggtctt--attcttttcctaaggtactatccttggtttttaacaacttgttttctttctgaatcattctattgcagGTTATTTTCTTTACTGACCCAGTGGATGAGTACCTGATGCAATACCTGATGGACTATGAAGACAAAAAATTCCAGAATGTGTCAAAGGAAGGCCTGAAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|67024101|gb|CO452850.1|CO452850EST: AGCTGGAGAAGTCTCCGTTCCTCGAGAGGCTAACCAAGAAGAACTACGAG GTCATCTTCTTCACCGACCCTATGGACGAGTACCTGATGCAGTACCTGATG
genomic: AGCTGGAGAAGTCTCCGTTCCTGGAGAGGCTAACCAAGAAGAACTACGAGgtatatatgt ... gtttttgcagGTCATCTTCTTCACCGACCCTATGGACGAGTACCTGATGCAGTACCTGATG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgagaagtaccaacgctgcgcttgttttgttttgttttgttttgtttttgcagGTCATCTTCTTCACCGACCCTATGGACGAGTACCTGATGCAGTACCTGATGGACTACGAGGACAGGAAGTTCCAGAACGTGTCCAAGGAGGGCCTGAAGC
ttttgttttgttttt CT-rich tract
ttttgttttgttttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatatatgtatgctgctggtttatccactttcattacagtgtggggtctggaatacagcttgagaagtaccaacgctgcgcttgttttgttttgttttgttttgtttttgcagGTCATCTTCTTCACCGACCCTATGGACGAGTACCTGATGCAGTACCTGATGGACTACGAGGACAGGAAGTTCCAGAACGTGTCCAAGGAGGGCCTGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC