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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttacaataatggatgccaatacacatgatcttgctggtgcttacattgtttctgaagaatatttagaactaataatggcttttcctgttaaatttgcagAGAGAAGGGATGACCATTCATGCTGAACGGCTCAACTTTCATCGTTATATCTCACACTTCCGTTCTGTTCATAGGGGCTCTGCTTTTGCTAAAATGCGTA

Basic information

species Zea mays
transcript GRMZM2G388892_T02
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G388892_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os10g35290.1 (Oryza sativa), 3'ss of exon 12
-tttacaataatg---gatgccaat-acacatgatcttgctggtgcttacattgtttctgaagaatatttagaactaataatggcttttcctgttaaatttgcagAGAGAAGGGATGACCATTCATGCTGAACGGCTCAACTTTCATCGTTATATCTCACACTTCCGTTCTGTTCATAGGGGCTCTGCTTTTGCTAAAATGCGTA
 ||  ||| || |     |  || | |      || ||| | ||| | ||| |  |     |  || |||| |  | ||||   | |||     ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||| |||||||| |||  |||||||||||||||||
cttggcaagaacgttcattttcagttaagttcaatgttgtttgtgttcacagtcctctcagatcatttttatatgtgataagcaccttt-----taaatttgcagCGAGATGGGATGACCATTCATGCTGAACGGCTCAACTTTCATCGTTATATTTCGCATTTCCGGTCTGTGCATAGGGGTTCTAGTTTTGCTAAAATGCGTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtttctgaagaatatttagaactaataatggcttttcctgttaaatttgcagAGAGAAGGGATGACCATTCATGCTGAACGGCTCAACTTTCATCGTTATATCTCACACTTCCGTTCTGTTCATAGGGGCTCTGCTTTTGCTAAAATGCGTA
                      aactaat  putative branch site (score: 2)
          aagaatatttagaact  TA-rich tract