1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aacacatcataaatcataacaagtttttttagaaataacgaactgataatttgcagtatgcatcattttatatgttccactaactctttctctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTCGTCTCCTGAGAGATGCAAAATTGTTTGAGATTGGTGCCGGTACTAGTG
species | Zea mays |
transcript | GRMZM2G381051_T03 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|148952108|gb|EC897900.2|EC897900
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|24763821|gb|CA398992.1|CA398992
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|40333869|gb|CK367939.1|CK367939
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|148928298|gb|EE284912.2|EE284912
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTTTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|211502819|gb|FL436168.1|FL436168
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|149073601|gb|EE161904.2|EE161904
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|14529291|gb|BI096424.1|BI096424
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|37375704|gb|CF624307.1|CF624307
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|148949902|gb|EC895400.2|EC895400
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|31352282|gb|CD436639.1|CD436639
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|60356707|gb|DN223680.1|DN223680
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|5871129|gb|AW017570.1|AW017570
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|15214937|gb|BI431104.1|BI431104
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|8576983|gb|BE129620.1|BE129620
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGCGGAAATGGGTACATAAATGAGTACCCAACTGEST: gi|40333885|gb|CK367955.1|CK367955
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTG
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|37399275|gb|CF636963.1|CF636963
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|213182546|gb|FM191704.1|FM191704
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAN NCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|78086928|gb|DV515321.1|DV515321
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|16925518|gb|BM078586.1|BM078586
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|86474638|gb|DY241008.1|DY241008
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|6095776|gb|AW120443.1|AW120443
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|86472558|gb|DY238928.1|DY238928
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|37394249|gb|CF634396.1|CF634396
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|6020797|gb|AW065725.1|AW065725
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGCAATTCTCTTTGTTGTTGAAAATGCAACCCAAGNTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|211184390|gb|FL255399.1|FL255399
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTEST: gi|37375650|gb|CF624276.1|CF624276
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
EST: CAGGAGTAATTTTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAG GCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
genomic: CAGGAGTAATTCTCTTTGCTGCTGAAAATGCAACCCAAGTTGCACTTCAGgtaaaaacct ... tctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGT
ataatttgcagtatgcatcattttatatgttccactaactctttctctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTCGTCTCCTGAGAGATGCAAAATTGTTTGAGATTGGTGCCGGTACTAGTG
cactaac putative branch site (score: 1)
ctaactctttctct CT-rich tract
atcattttatatgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacacatcataaatcataacaagtttttttagaaataacgaactgataatttgcagtatgcatcattttatatgttccactaactctttctctatggcagGCAATCCAGTGTCTTGGTGGAAATGGGTACATAAATGAGTACCCAACTGGTCGTCTCCTGAGAGATGCAAAATTGTTTGAGATTGGTGCCGGTACTAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG