Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgagccatcttgcatgaatttcacctctctactatctctctccgttaaggcatgaacgatccacttaccttgcattcatctctgaacagAGAGGATGGACGAAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGCCCCCGGAGGGCCAACCTTCGTCCCACTCCAGCGTTCCACAGGAAAAATA

Basic information

species Zea mays
transcript GRMZM2G375904_T02
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G375904_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os05g43570.3 (Oryza sativa), 3'ss of exon 13
gtaatgagccatcttgc-atgaatttcacctctctactatctctctccgttaaggcatgaacgatccacttaccttgcattcatctctgaa-cagAGAGGATGGACGAAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGCCCCC---GGAGGGCCAACCTTCGTCCCACTCCAGCGTTCCACAGGAAAAATA
||| |||||  | ||   |   |||    |  | ||| | |     |||||      |  | |||    ||| ||||| || |||  | || ||||||| ||||| ||||| |||||||||||||| |||||||||| |||||||||||    |||||| |||||||| || ||||||| | ||||||  ||| |   
gtattgagcactattattacctattggttccttatac-accatgtaccgttt-----ttcatgatatgtttaacttgcttttatccttaaaacagAGAGCATGGATGAAGATGAGCCTGTTCAAGGAAGTTTCTTAAATATGTTGCCCCATAAGGAGGGGCAACCTTCATCTCACTCCACCATTCCACCAGAACA---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5895617|gb|AW036863.1|AW036863
EST:     GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTG                         AGAGGATGGACGGAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGC
genomic: GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTGgtaatgagcc ... ctctgaacagAGAGGATGGACGAAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGC
EST: gi|28187719|gb|CB179329.1|CB179329
EST:     GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTG                         AGAGGATGGACGAAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGC
genomic: GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTGgtaatgagcc ... ctctgaacagAGAGGATGGACGAAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGC
EST: gi|5901099|gb|AW042199.1|AW042199
EST:     GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTG                         AGAGGATGGACGGAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGC
genomic: GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTGgtaatgagcc ... ctctgaacagAGAGGATGGACGAAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGC
EST: gi|33285627|gb|CF075422.1|CF075422
EST:     GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTG                         AGAGGATGGACNAAGAGGAGCCTGTTCA-GGGA
genomic: GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTGgtaatgagcc ... ctctgaacagAGAGGATGGACGAAGAGGAGCCTGTTCAAGGGA
EST: gi|211195854|gb|FL001022.1|FL001022
EST:     GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTG                         AGAGGATGGACGAAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGC
genomic: GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTGgtaatgagcc ... ctctgaacagAGAGGATGGACGAAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGC
EST: gi|32934179|gb|CF038991.1|CF038991
EST:     GAAGAAAAAGAGTTCCAAACCAAAGCGGCCAACCATCAAGACAATGTTTG                         AGAGGATGGACGGAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGC
genomic: GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTGgtaatgagcc ... ctctgaacagAGAGGATGGACGAAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGC
EST: gi|149049839|gb|EE048526.2|EE048526
EST:     GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTG                         AGAGGATGGACGAAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGC
genomic: GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTGgtaatgagcc ... ctctgaacagAGAGGATGGACGAAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGC
EST: gi|32870336|gb|CF010018.1|CF010018
EST:     GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTG                         AGAGGATGGACGGAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTAT
genomic: GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTGgtaatgagcc ... ctctgaacagAGAGGATGGACGAAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTAT
EST: gi|5597186|gb|AI891179.1|AI891179
EST:     GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTG                         AGAGGATGGACGGAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGC
genomic: GAAGAAAAAGAGTTCCAAACCAAAGCGACCAACCATCAAGACAATGTTTGgtaatgagcc ... ctctgaacagAGAGGATGGACGAAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctctccgttaaggcatgaacgatccacttaccttgcattcatctctgaacagAGAGGATGGACGAAGAGGAGCCTGTTCAAGGGAGTTTCTTAAGTATGTTGCCCCCGGAGGGCCAACCTTCGTCCCACTCCAGCGTTCCACAGGAAAAATA
                           cacttac  putative branch site (score: 2)
                                        ttcatctct  putative PPT