1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tgattctattggaggcacatacttatatagactaaagaacttgttagacaggacccatcttctaatatacaactttgtttatttgggttttgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTGGAACGTTGGGTGGTATGGTCACAACTGTTGAAGGTTTAATTGTGAAAA
species | Zea mays |
transcript | GRMZM2G351582_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|6445448|gb|AW179366.1|AW179366
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|20513026|gb|BQ280212.1|BQ280212
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|78544301|gb|DV621799.1|DV621799
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|211367141|gb|FL432366.1|FL432366
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|211282780|gb|FL192971.1|FL192971
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|88748313|gb|DY532454.1|DY532454
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|20803326|gb|BQ294376.1|BQ294376
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: ATGCCCAAGCCCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTCCCTGAACTTGAGTTGGAACTTTCATGTEST: gi|30306974|gb|CD001647.1|CD001647
genomic: ATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|78085694|gb|DV514087.1|DV514087
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|31611962|gb|CD568584.1|CD568584
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|29945539|gb|CB815690.1|CB815690
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACNCTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|211282779|gb|FL192970.1|FL192970
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: CACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|37401209|gb|CF637968.1|CF637968
genomic: CACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|67020485|gb|CO449234.1|CO449234
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|60353658|gb|DN220631.1|DN220631
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|60395671|gb|DN228541.1|DN228541
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|29946582|gb|CB816222.1|CB816222
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|211282782|gb|FL192973.1|FL192973
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|78543505|gb|DV621003.1|DV621003
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|149027381|gb|EE046513.2|EE046513
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|78543967|gb|DV621465.1|DV621465
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|60350354|gb|DN217327.1|DN217327
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|113655504|gb|DW808848.1|DW808848
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: GTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAA-GTACCTGAACTTGAGTTGGAACTTEST: gi|28568977|gb|CB280852.1|CB280852
genomic: GTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|7135394|gb|AW498064.1|AW498064
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|211367140|gb|FL432365.1|FL432365
genomic: TACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACMCTGSGTGTTCAAAATGCMCAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|7135020|gb|AW497876.1|AW497876
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|60357973|gb|DN224946.1|DN224946
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTEST: gi|211282781|gb|FL192972.1|FL192972
genomic: TTACACTGCGTGTTCAAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
EST: AAAATGCACAAGACCTTACTCGTGATGKCATAAAG TCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
genomic: AAAATGCACAAGACCTTACTCGTGATGTCATAAAGgtttggatgt ... tgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGT
agacaggacccatcttctaatatacaactttgtttatttgggttttgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTGGAACGTTGGGTGGTATGGTCACAACTGTTGAAGGTTTAATTGTGAAAA
ttctaat putative branch site (score: 124)
ttttgtttttc putative PPT
taatatacaactttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattctattggaggcacatacttatatagactaaagaacttgttagacaggacccatcttctaatatacaactttgtttatttgggttttgtttttcagTCAGATTCAGCTAGCGTAAAAGTACCTGAACTTGAGTTGGAACTTTCATGTGGAACGTTGGGTGGTATGGTCACAACTGTTGAAGGTTTAATTGTGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
tgattct
- - - - - - - -cacatac
- - - - - - - - - - - - - - - - -aaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaac