Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagttgcatatctcgccctcacaatctttctctttagtacctcctttttgcgcactgtgctaattattgcttcaatcagGCCATTTTATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCTGAACAACAACCTAATAGCATGCTTGCAAC

Basic information

species Zea mays
transcript GRMZM2G341732_T02
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17929673|gb|BM266633.1|BM266633
EST:     TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAGTCAGAAGCGCATCTAA                         GCCATTTTATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCTGAACAAC
genomic: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAGTCAGAAGCGCATCTAAgtagttgcat ... cttcaatcagGCCATTTTATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCTGAACAAC
EST: gi|78077119|gb|DV505553.1|DV505553
EST:     TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAGTCAGAAGCGCATCTAA                         GCCATTTTATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCTGAACAAC
genomic: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAGTCAGAAGCGCATCTAAgtagttgcat ... cttcaatcagGCCATTTTATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCTGAACAAC
EST: gi|149008599|gb|EE040781.2|EE040781
EST:     TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAGTCAGAAGCGCATTTAA                         GCCATTTTATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCTGAACAAC
genomic: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAGTCAGAAGCGCATCTAAgtagttgcat ... cttcaatcagGCCATTTTATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCTGAACAAC
EST: gi|32919641|gb|CF024453.1|CF024453
EST:     TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAGTCAGAAGCGCATCTAA                         GCCATTTTATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCTGAACAAC
genomic: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAGTCAGAAGCGCATCTAAgtagttgcat ... cttcaatcagGCCATTTTATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCTGAACAAC
EST: gi|91056962|gb|EB167380.1|EB167380
EST:     TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAGTCAGAAGCGCATCTAA                         GCCATTTTATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCTGAACAAC
genomic: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAGTCAGAAGCGCATCTAAgtagttgcat ... cttcaatcagGCCATTTTATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCTGAACAAC
EST: gi|67019717|gb|CO448466.1|CO448466
EST:     TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAGTCAGAAGCGCATCTAA                         GCCATTTTATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCTGAACAAC
genomic: TGTTCCTCCACAGCAGCCTCACCAGCTCTATCAGTCAGAAGCGCATCTAAgtagttgcat ... cttcaatcagGCCATTTTATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCTGAACAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttctctttagtacctcctttttgcgcactgtgctaattattgcttcaatcagGCCATTTTATGATGCAGCAAGTTCCGAACAGCATGCCCATGCCTGAACAACAACCTAATAGCATGCTTGCAAC
                                 tgctaat  putative branch site (score: 2)
                                          ttgcttc  putative PPT
                                    taattatt  TA-rich tract