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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttgccagacctggtcacatttgtaaatgcactaaaacatgtcctgagatgacactggtgaattctgtttcagGTGCATTTCTTCCTCAAGCGTACAGTTGGGAATCTATCAGATGCTGAGATTGCACGGCTTAATTTGTGGGCATTAGGTCTCCGTGTTCTTTCCTTATTGC

Basic information

species Zea mays
transcript GRMZM2G327311_T02
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G327311_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os01g40990.2 (Oryza sativa), 3'ss of exon 21
gtatgttgccagacctggtcacatttgt-aaatgcactaaaacatgtcc---------tgagatgacactggtgaattctgtttcagGTGCATTTCTTCCTCAAGCGTACAGTTGGGAATCTATCAGATGCTGAGATTGCACGGCTTAATTTGTGGGCATTAGGTCTCCGTGTTCTTTCCTTATTGC
|||||||| ||||  ||  |||||  || || ||   |||| | |  |          | |  ||| |  | | |||    |||||||| || || || || |||||||||||||||||||| ||||||| |||  ||||||| |||||||  ||||| ||||||||||| ||||| ||||||||||
gtatgttggcagatgtga-cacataagtcaagtgtggtaaagctttcctttcagtgattaaattgaaatcgattaatgtactttcagGTACACTTTTTTCTTAAGCGTACAGTTGGGAATCTGTCAGATGATGATGTTGCACGACTTAATTCATGGGCCTTAGGTCTCCGGGTTCTGTCCTTATTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgtaaatgcactaaaacatgtcctgagatgacactggtgaattctgtttcagGTGCATTTCTTCCTCAAGCGTACAGTTGGGAATCTATCAGATGCTGAGATTGCACGGCTTAATTTGTGGGCATTAGGTCTCCGTGTTCTTTCCTTATTGC
           cactaaa  putative branch site (score: 2)
                                            ttctgtttc  putative PPT
              taaaacat  TA-rich tract