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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaacctacatcccaagtttattgctttcttgctttgttcaaaacatatatcttatctaaaagttacctcctgtagAAATTCATTATTAAAGAAAATAGACCAAAGACAACAAGAATAACTCAAGTGATTCAAGGTTTTGAGAATCACACATTCAAGTCTAAGTTTGAGTCATGGC

Basic information

species Zea mays
transcript GRMZM2G323479_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G323479_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os03g24220.1 (Oryza sativa), 3'ss of exon 8
gtaaacctacatcccaagtttattgctttcttgctttgt-tcaaaacatatatcttatc-taaaagttacctcctgtagAAATTCATTATTAAAGAAAATAGACCAAAGACAACAAGAATAACTCAAGTGATTCAAGGTTTTGAGAATCACACATTCAAGTCTAAGTTTGAGTCATGGC
||||  ||  | ||   ||||  | |||| ||  ||  |  | |  || || | |||   |  || ||  |   ||||| ||||||||  ||   ||||||| ||||||||||||||| |||| | |||||||||||| |  |||||||| |||||||||||||||||||| |||||||
gtaagtctcaagccattgttttcttcttttttttttcttgcctattcaaatttgttaggatctaaatttgcctttgtagGAATTCATTGCTACTCAAAATAGGCCAAAGACAACAAGAGTAACCCGAGTGATTCAAGGGTACGAGAATCATACATTCAAGTCTAAGTTTGAATCATGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgctttcttgctttgttcaaaacatatatcttatctaaaagttacctcctgtagAAATTCATTATTAAAGAAAATAGACCAAAGACAACAAGAATAACTCAAGTGATTCAAGGTTTTGAGAATCACACATTCAAGTCTAAGTTTGAGTCATGGC
                                 atctaaa  putative branch site (score: 3)
                                          ttacctcct  putative PPT
                   aaaacatatatcttat  TA-rich tract