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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatatgagttttttgttctacagctatgccctatgctaaattcactaacaacatgagacacttctaatcgtctcttgttcctggtataccttatgtaaatgctatctgttttaaagttttctccctgcactgtcttgtaaaagtgtatgttgagcctgtttgctagtaaaattataatatttcagGCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTCTGTTGCATATGTAGCAGTGAATGGTGCTCTGGCTGGTCTTATTTGTTTT

Basic information

species Zea mays
transcript GRMZM2G315931_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G315931_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os08g37950.1 (Oryza sativa), 3'ss of exon 13
gtacatatgagttttttgttctacagctatgccc--tatgctaaattcac----taacaacatgagacacttctaatcgtctcttgttcctggtataccttatgt--aaatgctatctgttttaaagttttctccctgcactgtcttgta---aaagtgtatgttgagcctgtttgctagtaaaattataatatttcagGCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTCTGTTGCATATGTAGCAGTGAATGGTGCTCTGGCTGGTCTTATTTGTTTT
||||| |||| || ||| || | ||| | ||     |||||    | |      ||  ||  | | | ||||| | |  |||  | |||  | |||   ||||||   ||  |||    |||   |||| |  |  | |    |  ||||   ||  ||     ||||    | ||||    |  | ||  | |||||||||||| ||  ||||||| || ||  | || | |||  ||||||| |||||||||||||||||||| ||| ||||| |||| ||||| ||||||||||||
gtacaaatgaattatttattgtgcagttgtgatgaatatgccttgtccttctgatagaaaatttacaaacttc-agttctctactcttcacgctatctgttatgtcttaagtctactattttcttagttctagcaatacttaatgatgtactaaatatgatcactgagggactctgctcactacctaat--tgtttcagGCATGGAGTTCTTCACAATCCATTTGCTGATGGAGAAAATTTTGGTCAGTCTGTTGCATATGTAGCTGTGGATGGTACTCTAGCTGGACTTATTTGTTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32929758|gb|CF034570.1|CF034570
EST:     ACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAG                         GCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
genomic: ACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAGgtacatatga ... aatatttcagGCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
EST: gi|78104271|gb|DV522689.1|DV522689
EST:     ACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAG                         GCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
genomic: ACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAGgtacatatga ... aatatttcagGCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
EST: gi|211170367|gb|FL103276.1|FL103276
EST:     ACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAG                         GCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
genomic: ACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAGgtacatatga ... aatatttcagGCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
EST: gi|32823148|gb|CD962870.1|CD962870
EST:     ACCATTGGTGAGAAGCAGGTTTCTGTTGGACCATTAGATTGGATTAGAAG                         GCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
genomic: ACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAGgtacatatga ... aatatttcagGCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
EST: gi|13125965|gb|BG316640.1|BG316640
EST:     ACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAG                         GCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
genomic: ACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAGgtacatatga ... aatatttcagGCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
EST: gi|32929848|gb|CF034660.1|CF034660
EST:     ACCATTGGTGAGAAGCAGGTTTCTGTTGGACCATTAGATTGGATTAGAAG                         GCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
genomic: ACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAGgtacatatga ... aatatttcagGCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
EST: gi|32929738|gb|CF034550.1|CF034550
EST:     ACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAG                         GCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
genomic: ACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAGgtacatatga ... aatatttcagGCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
EST: gi|32929733|gb|CF034545.1|CF034545
EST:     ACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAG                         GCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC
genomic: ACCATTGGTGAGAAGCAGGTTTCTGTTGGAACATTAGATTGGATTAGAAGgtacatatga ... aatatttcagGCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcttgtaaaagtgtatgttgagcctgtttgctagtaaaattataatatttcagGCATGGGGTCATTCACAACCCCTTCCCAGAAGCAGAGCATTTTGGCCAGTCTGTTGCATATGTAGCAGTGAATGGTGCTCTGGCTGGTCTTATTTGTTTT
                            tttgctagtaaaatta  TA-rich tract