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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actctaaattatcgtggtgctaattttccttggatcactatctatccttctgtacacactattgccttactaaagttagttatttcttctttgtctacagGAATGCTATAGCTTAATGCCCTAATCTTTATATGCCTCTTCTTATATCTGCACTTCCATGGGCACCGGGCGACACTAAATTCACAAGATACCCCCTCCAC

Basic information

species Zea mays
transcript GRMZM2G311165_T06
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28910090|gb|CB331257.1|CB331257
EST:     CTACTCAAGAAGGGAAAAGATCAGAATCGCAAGGCCAGATTCTTAGGGTG                         GAATGCTATAGCTTAATGCCCTAATCTTTATATGCCTCTTCTTATATCTGC
genomic: CTACTCAAGAAGGGAAAAGATCAGAATCGCAAGGCCAGATTCTTAGGGTGgtaagccttt ... ttgtctacagGAATGCTATAGCTTAATGCCCTAATCTTTATATGCCTCTTCTTATATCTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttctgtacacactattgccttactaaagttagttatttcttctttgtctacagGAATGCTATAGCTTAATGCCCTAATCTTTATATGCCTCTTCTTATATCTGCACTTCCATGGGCACCGGGCGACACTAAATTCACAAGATACCCCCTCCAC
                      tactaaa  putative branch site (score: 1)
                                  ttatttcttctttgtc  putative PPT
                         taaagttagttattt  TA-rich tract