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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtaacaatactccctacttctttagggtgtttacattgtgatgtacatgtgcacatgtgattaatctttctattttttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT

Basic information

species Zea mays
transcript GRMZM2G304362_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 3'ss of exon 13
gtctgtaacaatactccctacttctttagggtgtttacattgtgatgtacatgtgcacatgtgattaatctttctattttttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT
|| |||||| | |||       |  |||| |        | ||| |    |   |  | | ||||| || ||  |   || | |||||||||||| ||||||||||| |||||||||||||| |||||| |||||||||||||  ||||||||||  || |||||||  ||||||| || || || |||
gtttgtaactacactg------ttcttagtgc-------tcgtgctcactacaggtgcttatgattgattttgtttaattcttttccagTGGGGAGTTTGTTGTGGTTAACAAGCATCTTCTCCATGATTTGACTGAAATGGGTGTTTGGACTCCAGCTCTGAAAAATAAGATAATTTATGAAGATGGT

upper sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 13
lower sequence: GLYMA04G39500.1 (Glycine max), 3'ss of exon 13
gtctgtaacaatactccctacttctttagggtgtttacattgtgatgtac-atgtgcacatgtgattaatcttt----ctattttttgttcc-agTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT
              |  ||  |||    | ||  ||   |  || ||||  || | | ||||    ||   | |    | | | |||||| | ||||| ||||||||||| || ||||||||||||||||||||  |||||||||||||  | ||| ||||||| || || ||  |||| || || || || || 
------------gtttgctttttcgcccgtgttattctgtcttggtgtattattttcccatgatcctatcttattgggcaactgtttgtttctagTGGTGAATTTGTTGTTGTGAACAAGCATCTTCTTCATGACTTGACTGAAATGGGACTGTGGTCTCCTACATTAAAGAATAAGATTATCTATGAAGATGGC

upper sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 13
lower sequence: GLYMA08G15360.1 (Glycine max), 3'ss of exon 15
gtctgtaacaatactccctacttctttagggtgtttacattgtgatgtacatgtgcacatgtgattaatctttctattttttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT
    ||   ||  |||  | |      |   | || |  || |||| | | | |  |  | |  | | | ||     ||| | || |||||| |||||||||||||| ||||||||| | ||||||||  ||||  ||    | ||    | |  ||  |   |  |                      
----gttttaaggctcattgccgtaccatcttatt-attttttgatat-cttattgatctattttgattgttaactgtttgtctttcagtggtgaatttgttgtggtgaacaagCATTTACTTCATGACTTGACACAATCAAGAAT----AATATTATCTCTGAGGATG--------------------

upper sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 13
lower sequence: GLYMA06G15350.1 (Glycine max), 3'ss of exon 13
gtctgtaacaatactccctacttctttagggtgtttacattgtgatgtacatgtgcacatgtgattaatctttctattttttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT
|| ||      | |  || | || ||  |  |   |  | | |    | ||||  |  || | | |   ||  || ||| ||  || ||||| ||||||||||| || ||||||||||||||||||||  |||||||||||||  | ||| ||||||| || || ||  |||| || || || || || 
gtttgc--tttttcatcccattttttctgtcttggtgtactattgcct-catgatcctatcttactgggcta-ctgtttgtt--tctagTGGTGAATTTGTTGTTGTGAACAAGCATCTTCTTCATGACTTGACTGAAATGGGACTGTGGTCTCCTACATTAAAGAATAAGATTATCTATGAAGATGGC

upper sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 13
lower sequence: GLYMA05G32070.1 (Glycine max), 3'ss of exon 13
gtctgtaacaatactccctacttctttagggtgtttacattgtgatgtacatgtgcacatgtgattaatctttctattttttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT
              |   | |    | |   | || |  || |||| | | | |  |  | |  | | | ||     ||| | || |||||| ||||||||||| || ||||||||| | ||||||||  |||||||||||||  ||||| |||||||  | || ||  | || || || || || |||
------------gtttattgccatatcatcttatt-atgttttgatat-cttattgatctatcttgattgttaactgtttgtctttcagTGGTGAATTTGTTGTAGTGAACAAGCATTTACTTCATGACTTGACTGAAATGGGACTTTGGTCTCCTACAATCAAGAATAATATTATCTATGAGGATGGT

upper sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 13
lower sequence: AT2G21790.1 (Arabidopsis thaliana), 3'ss of exon 13
gtctgtaacaatactccctacttctttagggtgtttacattgtgatgtacatg-tgcacatgtgattaatctttctattttttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT
|| ||| |  ||       | ||    ||  |||||    | |     |  || |||  |     ||  |  |  |  ||| |    |||||| ||||| || ||||| || ||||||||||| ||||| || ||||| |||||  |||||||||| ||  |||||||| |  ||||  | ||  | |||
gtatgtgaatat-taaatcatttgacaagtatgtttctggttttccccatttgatgcttactcacttggttgtcttggtttgta---cagTGGTGAATTCGTAGTGGTTAATAAGCATCTTCTCCATGACCTAACTGATATGGGACTTTGGACTCCAACGCTGAAAAACAAATTAATTAATGAGAATGGT

upper sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 13
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 13
gtctgtaacaatactccctacttctttagggtgtttacattgtgatgtacatgtgcacatgtgattaatctttctattttttgtt-ccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT
|| |||     ||| ||  || | || |   | |     ||   |  |   |   ||  |  |  |  ||||||  | |||  ||  |||||| |||||||||||||| ||||||||||||||||||||  | ||||| |||||  ||||| | |||||| | || ||||||||||| || ||  | || 
gtttgttttgctac-cctaacctgttcattttctaagatttagtacttttgttgccatctaagtctcctctttccttgtttctttgtcagTGGTGAATTTGTTGTGGTAAACAAGCATCTTCTTCATGACTTAACTGAGATGGGTCTTTGGTCACCTACTCTTAAGAACCAGATAATTTATGAGAATGGC

upper sequence: GRMZM2G304362_T01 (Zea mays), 3'ss of exon 13
lower sequence: EFJ20162 (Selaginella moellendorffii), 3'ss of exon 1
gtctgtaacaatactccctacttctttagggtgtttacattgtgatgtacatgtgcacatgtgattaatctttctattttttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT
                                        | ||   |   | || |   |   |  ||  || | ||   || | |||||| |||||||||||||| ||||||||||| ||  | ||| |||||||  |||| || ||||| ||   | |||| |  ||| |    |           
---------------------------------------gtatgccttctttctgtatcagctgt-gatacttatgttgcctgctacagTGGTGAATTTGTTGTGGTTAACAAGCATCTGCTGAACGATTTGACTGATTTGGGAATATGGACACCGGATCTGAATATACAGGTTGGTTT----------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32932369|gb|CF037181.1|CF037181
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|32934636|gb|CF039448.1|CF039448
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|211165343|gb|FL103231.1|FL103231
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|211165341|gb|FL103229.1|FL103229
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATC
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATC
EST: gi|28931227|gb|CB334588.1|CB334588
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|13150171|gb|BG320493.1|BG320493
EST:     GAGTG-TTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|32934774|gb|CF039586.1|CF039586
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGAAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|5895790|gb|AW037036.1|AW037036
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGNGGTTAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|29577171|gb|CB617283.1|CB617283
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|32933139|gb|CF037951.1|CF037951
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|32945530|gb|CF050349.1|CF050349
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACATTTTTCGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|32934883|gb|CF039695.1|CF039695
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|32933143|gb|CF037955.1|CF037955
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|32931555|gb|CF036367.1|CF036367
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|211165342|gb|FL103230.1|FL103230
EST:     ATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTTAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: ATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|211165339|gb|FL103227.1|FL103227
EST:     CAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTTAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: CAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|91879055|gb|EB409012.1|EB409012
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|33094392|gb|CF054386.1|CF054386
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|32935070|gb|CF039882.1|CF039882
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|211165335|gb|FL103223.1|FL103223
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAAYTTGTTGTGGTCAACAMGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|32932471|gb|CF037283.1|CF037283
EST:     TACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: TACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|211165338|gb|FL103226.1|FL103226
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGGT-AACAAGCATCTTCTTCATGATCT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGG-TCAACAAGCATCTTCTTCATGATCT
EST: gi|211165344|gb|FL103232.1|FL103232
EST:     CAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTTAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: CAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
EST: gi|32932118|gb|CF036930.1|CF036930
EST:     GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAG                         TGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT
genomic: GAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 250

TTGTTGCTCCAATGCCCACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT


Block sizes: 48 (upstream exon), 45 (downstream exon)
Score: 87

TTGTTGCTCCAATGCCCACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 67

TTGTTGCTCCAATGCCCACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT


Block sizes: 48 (upstream exon), 45 (downstream exon)
Score: 31

TTGTTGCTCCAATGCCCACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaaca ... tttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacattgtgatgtacatgtgcacatgtgattaatctttctattttttgttccagTGGGGAATTTGTTGTGGTCAACAAGCATCTTCTTCATGATCTGACTGAAATGGGCATTTGGACTCCTACTTTGAAAAACCAGATAATATACGACGACGGT
                            gattaat  putative branch site (score: 31)
                                  tctttctattttttgt  CT-rich tract
                             attaatctttctattt  TA-rich tract