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...attgtggggaaaatagtttttgtcacatagtttgcgagttaattcagtccaaacctattatgcacaagtatgaaatatatgtagtaatattgaattgcagGATGGAGTGGATTCACAGGTTTCTGAGAAAACTCAAAAATCACGCCCGATATTGGGTAGAAGTGGTGTAAATGGAGTAGTTACTGACCACATCCAG
species | Zea mays |
transcript | GRMZM2G180335_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CACAGCAGCAAGTTAGGTCTGCCAAAACGTCTGCAGTGGTAGTAAGAAAG GATGGAGTGGATTCACAGGTTTCTGAGAAAACTCAAAAATCACGCCCGATAEST: gi|211302452|gb|FL244058.1|FL244058
genomic: CACAGCAGCAAGTTAGGTCTGCCAAAACGTCTGCAGTGGTAGTAAGAAAGgtatgcatgg ... tgaattgcagGATGGAGTGGATTCACAGGTTTCTGAGAAAACTCAAAAATCACGCCCGATA
EST: CACAGCAGCAAGTTAGGTCTGCCAAAATGTCTGCAGTGGTAGTAAGAAAG GATGGAGTGGATTCACAGGTTTCTGAGAAAACTCAAAAATCACGCCCGATAEST: gi|74238214|gb|DT646128.1|DT646128
genomic: CACAGCAGCAAGTTAGGTCTGCCAAAACGTCTGCAGTGGTAGTAAGAAAGgtatgcatgg ... tgaattgcagGATGGAGTGGATTCACAGGTTTCTGAGAAAACTCAAAAATCACGCCCGATA
EST: CACAGCAGCAAGTTAGGTCTGCCAAAACGTCTGCAGTGGTAGTAAGAAAG GATGGAGTGGATTCACAGGTTTCTGAGAAAACTCAAAAATCACGCCCGATAEST: gi|78087100|gb|DV515493.1|DV515493
genomic: CACAGCAGCAAGTTAGGTCTGCCAAAACGTCTGCAGTGGTAGTAAGAAAGgtatgcatgg ... tgaattgcagGATGGAGTGGATTCACAGGTTTCTGAGAAAACTCAAAAATCACGCCCGATA
EST: CACAGCAGCAAGTTAGGTCTGCCAAAACGTCTGCAGTGGTAGTAAGAAAG GATGGAGTGGATTCACAGGTTTCTGAGAAAACTCAAAAATCACGCCCGATA
genomic: CACAGCAGCAAGTTAGGTCTGCCAAAACGTCTGCAGTGGTAGTAAGAAAGgtatgcatgg ... tgaattgcagGATGGAGTGGATTCACAGGTTTCTGAGAAAACTCAAAAATCACGCCCGATA
agtccaaacctattatgcacaagtatgaaatatatgtagtaatattgaattgcagGATGGAGTGGATTCACAGGTTTCTGAGAAAACTCAAAAATCACGCCCGATATTGGGTAGAAGTGGTGTAAATGGAGTAGTTACTGACCACATCCAG
tatgaaatatatgtag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgtggggaaaatagtttttgtcacatagtttgcgagttaattcagtccaaacctattatgcacaagtatgaaatatatgtagtaatattgaattgcagGATGGAGTGGATTCACAGGTTTCTGAGAAAACTCAAAAATCACGCCCGATATTGGGTAGAAGTGGTGTAAATGGAGTAGTTACTGACCACATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - -ggaaaata
- - - - - - - -gtttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atatgta