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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctaatttttgcatgctgttgtacacctataccctggctaaacatgaaccagagttgcccatattaagactttttcacctatatgctatatccagtatagattagattgatatttttactaatattatttttcagGAAGTTGTTAGTGAGTGCCAACACATGAACTGGGGTACATTCAAGACTACACTCACGGAAGCTCTAATTGATCATTTGCAGCCTATTCAG

Basic information

species Zea mays
transcript GRMZM2G177970_T02
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32944158|gb|CF048977.1|CF048977
EST:     GAAGAAATCTTCTCTCTATATACCAGATTATCACTGGGAAGACTAAGGAG                         GAAGTTGTTGGTGAGTGCCAACACATGAACTGGGGTA
genomic: GCAGAAATCTTCTCTCTATATACCAGATTATCACTGAGAAGACTAAGGAGgtatctaatt ... tatttttcagGAAGTTGTTAGTGAGTGCCAACACATGAACTGGGGTA
EST: gi|71449703|gb|DR830753.1|DR830753
EST:     GCAGAAATCTTCTCTCTATATACCAGATTATCACTGAGAAGACTAAGGAG                         GAAGTTGTTAGTGAGTGCCAACACATGAACTGGGGTACATTCAAGACTACA
genomic: GCAGAAATCTTCTCTCTATATACCAGATTATCACTGAGAAGACTAAGGAGgtatctaatt ... tatttttcagGAAGTTGTTAGTGAGTGCCAACACATGAACTGGGGTACATTCAAGACTACA
EST: gi|32930432|gb|CF035244.1|CF035244
EST:     GCAGAAATCTTCTCTCTATATACCAGATTATCACTGGGAAGACTAAGGAG                         GAAGTTGTTAGTGAGTGCCAACACATGAACTGGGGTA
genomic: GCAGAAATCTTCTCTCTATATACCAGATTATCACTGAGAAGACTAAGGAGgtatctaatt ... tatttttcagGAAGTTGTTAGTGAGTGCCAACACATGAACTGGGGTA
EST: gi|32930572|gb|CF035384.1|CF035384
EST:     GCAGAAATCTTCTCTCTATATACCAGATTATCACTGGGAAGACTAAGGAG                         GAAGTTGTTAGTGAGTGCCAACACATGAACTGGGGT
genomic: GCAGAAATCTTCTCTCTATATACCAGATTATCACTGAGAAGACTAAGGAGgtatctaatt ... tatttttcagGAAGTTGTTAGTGAGTGCCAACACATGAACTGGGGT
EST: gi|78120427|gb|DV538811.1|DV538811
EST:     GCAGAAATCTTCTCTCTATATACCAGATTATCACTGAGAAGACTAAGGAG                         GAAGTTGTTAGTGAGTGCCAACACATGAACTGGGGTACATTCAAGACTACA
genomic: GCAGAAATCTTCTCTCTATATACCAGATTATCACTGAGAAGACTAAGGAGgtatctaatt ... tatttttcagGAAGTTGTTAGTGAGTGCCAACACATGAACTGGGGTACATTCAAGACTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgctatatccagtatagattagattgatatttttactaatattatttttcagGAAGTTGTTAGTGAGTGCCAACACATGAACTGGGGTACATTCAAGACTACACTCACGGAAGCTCTAATTGATCATTTGCAGCCTATTCAG
                                    tactaat  putative branch site (score: 1)
                                            ttatttttc  CT-rich tract
             agtatagattagattg  TA-rich tract