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gtaagctctaaagctcttatagcaattcttagtttttatccactatatttatatatgctgatatgcacgcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTGTTCGAGGAGGAGTTCGGGCGGCCGGACGCGATCATGATCCTGACGGTG
species | Zea mays |
transcript | GRMZM2G175779_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTEST: gi|14311435|gb|BG901190.1|BG901190
genomic: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
EST: GCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTEST: gi|76908487|gb|DV162965.1|DV162965
genomic: GCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
EST: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTEST: gi|21390502|gb|BQ528551.1|BQ528551
genomic: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
EST: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTEST: gi|78080985|gb|DV509397.1|DV509397
genomic: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
EST: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTEST: gi|89761736|gb|DY689632.1|DY689632
genomic: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
EST: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTEST: gi|87155117|gb|DY399906.1|DY399906
genomic: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
EST: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTEST: gi|76281439|gb|DV021007.1|DV021007
genomic: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
EST: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTEST: gi|26455203|gb|CA826786.1|CA826786
genomic: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
EST: CGCTACTGGATTTTCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTEST: gi|21330726|gb|BQ486107.1|BQ486107
genomic: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
EST: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTEST: gi|21330841|gb|BQ486222.1|BQ486222
genomic: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
EST: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTEST: gi|21330729|gb|BQ486110.1|BQ486110
genomic: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
EST: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTEST: gi|71756906|gb|DR954843.1|DR954843
genomic: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
EST: CGCTACTGGATTTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTEST: gi|21390197|gb|BQ528246.1|BQ528246
genomic: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
EST: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTEST: gi|76280915|gb|DV020483.1|DV020483
genomic: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
EST: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCT TTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
genomic: CGCTACTGGATCTCCTACAAGCACGCCCTCGGCCGGCCATCGCAGCAGCTgtaagctcta ... gcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCT
aattcttagtttttatccactatatttatatatgctgatatgcacgcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTGTTCGAGGAGGAGTTCGGGCGGCCGGACGCGATCATGATCCTGACGGTG
tgctgat putative branch site (score: 73)
ttagtttttatccact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctctaaagctcttatagcaattcttagtttttatccactatatttatatatgctgatatgcacgcgcgtgcagTTACCACGTGCCCCGGTCCTTCCTGCGGCAGAAGGACAACATGCTGGTGCTGTTCGAGGAGGAGTTCGGGCGGCCGGACGCGATCATGATCCTGACGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG