1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtattcccttcatctgcacaaatgcaagtttgaccattgtttgtttgcatgtctaaatgccacaatgcccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGGCTGCTTGCATGCTTTTGAGAATAGATGACATTGTCAGCGGTATCAAGA
species | Zea mays |
transcript | GRMZM2G175510_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|33093301|gb|CF053295.1|CF053295
genomic: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: TTGGCATTGATGGAAGGAGTGGCGATATTGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|4646563|gb|AI491301.2|AI491301
genomic: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|5895898|gb|AW037144.1|AW037144
genomic: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|116813897|gb|EC856391.1|EC856391
genomic: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTGCAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|22489574|gb|BU049497.1|BU049497
genomic: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|60349009|gb|DN215982.1|DN215982
genomic: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|60354814|gb|DN221787.1|DN221787
genomic: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|5608295|gb|AI902067.1|AI902067
genomic: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: GAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|71428864|gb|DR809914.1|DR809914
genomic: GAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAG ATTTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|18385090|gb|BM418289.1|BM418289
genomic: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|71332447|gb|DR803182.1|DR803182
genomic: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|71762722|gb|DR960659.1|DR960659
genomic: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|166634576|gb|EG174278.1|EG174278
genomic: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: CGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|78021982|gb|DV490369.1|DV490369
genomic: CGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGEST: gi|211513338|gb|FL030354.1|FL030354
genomic: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
EST: TTGGCATTGATGGAAGGAGTGGCGATATTGTTGATATGAAAGAGCGAAAG ATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
genomic: TTGGCATTGATGGAAGGAGTGGCGATATCGTTGATATGAAAGAGCGAAAGgtattccctt ... cccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAG
tgcaagtttgaccattgtttgtttgcatgtctaaatgccacaatgcccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGGCTGCTTGCATGCTTTTGAGAATAGATGACATTGTCAGCGGTATCAAGA
gtctaaa putative branch site (score: 116)
cccatttt putative PPT
atttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcccttcatctgcacaaatgcaagtttgaccattgtttgtttgcatgtctaaatgccacaatgcccattttagATCTGGGATTCCTACAGCGTTAAAGCGCAGACGTTCAAGACAGCGATTGAGGCTGCTTGCATGCTTTTGAGAATAGATGACATTGTCAGCGGTATCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT