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...tagctgggataatgcttacttattccatcatatagagaaaaggaaaggaaaaactgacaaggccttgaacttaactatctactccaacttccgtgagcagGCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGACAGGCAGGAGCTGATCAAGTTCCGT
species | Zea mays |
transcript | GRMZM2G174990_T03 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAG GCCCTCTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGACEST: gi|16380026|gb|BI993269.1|BI993269
genomic: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAGgtacgggctt ... ccgtgagcagGCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGAC
EST: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAG GCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGACEST: gi|211483107|gb|FK977834.1|FK977834
genomic: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAGgtacgggctt ... ccgtgagcagGCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGAC
EST: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAG GCCCTCTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGACEST: gi|31997891|gb|CD661822.1|CD661822
genomic: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAGgtacgggctt ... ccgtgagcagGCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGAC
EST: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAG GCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGACEST: gi|31611996|gb|CD568618.1|CD568618
genomic: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAGgtacgggctt ... ccgtgagcagGCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGAC
EST: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAG GCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGACEST: gi|71426246|gb|DR807296.1|DR807296
genomic: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAGgtacgggctt ... ccgtgagcagGCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGAC
EST: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAG GCCCTTTACGATGCTTTGATGCGACAGGATGAGCTGCTCGCGTACATTGACEST: gi|60672515|gb|DN475220.1|DN475220
genomic: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAGgtacgggctt ... ccgtgagcagGCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGAC
EST: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAG GCCCTCTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGACEST: gi|60336722|gb|DN203695.1|DN203695
genomic: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAGgtacgggctt ... ccgtgagcagGCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGAC
EST: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAG GCCCTCTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGACEST: gi|60336887|gb|DN203860.1|DN203860
genomic: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAGgtacgggctt ... ccgtgagcagGCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGAC
EST: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAG GCCCCTCTACGATGCTCTGATGCGACAGGATGAGCTGCTGGCGTACATTGAEST: gi|13557670|gb|BG549026.1|BG549026
genomic: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAGgtacgggctt ... ccgtgagcagGCCCTT-TACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGA
EST: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAG GCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGAC
genomic: CCGTCCGCCGCGTGGACGCGCTGGAAGCCGAGCTGATCTCCACGAAGAAGgtacgggctt ... ccgtgagcagGCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGAC
aggaaaaactgacaaggccttgaacttaactatctactccaacttccgtgagcagGCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGACAGGCAGGAGCTGATCAAGTTCCGT
cttccgt CT-rich tract
ttaactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagctgggataatgcttacttattccatcatatagagaaaaggaaaggaaaaactgacaaggccttgaacttaactatctactccaacttccgtgagcagGCCCTTTACGATGCTCTGATGCGACAGGATGAGCTGCTCGCGTACATTGACAGGCAGGAGCTGATCAAGTTCCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
-agctggg
- - - - - - tgcttac
- - - - - - - - - - - - - - - - - gagaaaag
- - - - - - - - - - - - - - - - - - - - - - -aggaaaaa