1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...atgatgtgtgtaatcagactcatttatcatcattgttgtacatgatggcatgttagtgcatagtggttggaaatctaactcgtcggtggtactcttacagGCGCCCCAAGGAGTGCATGTGGTGTGCAAGAGATTCCCTAGAATGAAGATCGTTACTTCGGAGATTGAGTCCGGTCTAAATGATGATTTCCGTGTCGTAC
species | Zea mays |
transcript | GRMZM2G169462_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TAAAGAAGGGTGTACAGGAAGCAAATATCATATTTCTTAATCTTATTTCA GCGCCCCCAGGAGTGCATGTGGTGTGCAAGAGATTCCCTAGAATGAAGATCEST: gi|211149646|gb|FL453992.1|FL453992
genomic: TAAAGAAGGGTGTACAGGAAGCAAATATCATATTTCTTAATCTTATTTCAgtaagtccta ... actcttacagGCGCCCCAAGGAGTGCATGTGGTGTGCAAGAGATTCCCTAGAATGAAGATC
EST: GTGTACAGGAAGCAAATATCATATTTCTTAATCTTATTTCA GCGCCCCAAGGAGTGCATGTGGTGTGCAAGAGATTCCCTAGAATGAAGATCEST: gi|5525730|gb|AI861623.1|AI861623
genomic: GTGTACAGGAAGCAAATATCATATTTCTTAATCTTATTTCAgtaagtccta ... actcttacagGCGCCCCAAGGAGTGCATGTGGTGTGCAAGAGATTCCCTAGAATGAAGATC
EST: TAAAGAAGGGTGT-CAGGAAGCAAATATCATATTTCTTAATCTTATTTCA GCGCCCCAAGGAGTGCATGTGGTGGGCAAGAGATTCCCTAGAATGAAGATC
genomic: TAAAGAAGGGTGTACAGGAAGCAAATATCATATTTCTTAATCTTATTTCAgtaagtccta ... actcttacagGCGCCCCAAGGAGTGCATGTGGTGTGCAAGAGATTCCCTAGAATGAAGATC
tggcatgttagtgcatagtggttggaaatctaactcgtcggtggtactcttacagGCGCCCCAAGGAGTGCATGTGGTGTGCAAGAGATTCCCTAGAATGAAGATCGTTACTTCGGAGATTGAGTCCGGTCTAAATGATGATTTCCGTGTCGTAC
atctaac putative branch site (score: 165)
tactctt putative PPT
aaatctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgatgtgtgtaatcagactcatttatcatcattgttgtacatgatggcatgttagtgcatagtggttggaaatctaactcgtcggtggtactcttacagGCGCCCCAAGGAGTGCATGTGGTGTGCAAGAGATTCCCTAGAATGAAGATCGTTACTTCGGAGATTGAGTCCGGTCTAAATGATGATTTCCGTGTCGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
atgatgt
- - - - - - - - - - - - - - - - - - -gtacatg
- - - - - - - - - - - - - - - - - - - - - - - - catgtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtggttg