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gttcgaatgactgtttccccttgtattgtctcagttcatctaattgtatgactgccctaaaatgaagttactcatttcttgctgttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGCATCAATGACTGTGACAGATG
species | Zea mays |
transcript | GRMZM2G169095_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGEST: gi|60395851|gb|DN228721.1|DN228721
genomic: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
EST: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGEST: gi|211089695|gb|FL030414.1|FL030414
genomic: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
EST: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGEST: gi|211089690|gb|FL030409.1|FL030409
genomic: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
EST: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGEST: gi|148948655|gb|EC898569.2|EC898569
genomic: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
EST: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGEST: gi|71439289|gb|DR820339.1|DR820339
genomic: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
EST: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGEST: gi|71760087|gb|DR958024.1|DR958024
genomic: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
EST: TGGAATTGGATCTTATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGEST: gi|67010801|gb|CO439550.1|CO439550
genomic: TGGAATTGGATCTTATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
EST: TCGGCATGGTACAGGCCATGGAATCGGATCTTATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGEST: gi|211089693|gb|FL030412.1|FL030412
genomic: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
EST: TATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTTCAAGEST: gi|211089692|gb|FL030411.1|FL030411
genomic: TATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
EST: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGEST: gi|86467956|gb|DY234326.1|DY234326
genomic: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
EST: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGEST: gi|211089696|gb|FL030415.1|FL030415
genomic: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
EST: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGEST: gi|67018778|gb|CO447527.1|CO447527
genomic: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
EST: CGGCATGGTACAGGCCATGGAATCGGATCTTATTTGAATGTCCATTGAAG -TCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGNCAEST: gi|211089691|gb|FL030410.1|FL030410
genomic: CGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCAT-GAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTG-CA
EST: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGEST: gi|211089694|gb|FL030413.1|FL030413
genomic: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
EST: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGEST: gi|211092150|gb|FL030416.1|FL030416
genomic: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
EST: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAG GTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
genomic: TCGGCATGGTACAGGCCATGGAATTGGATCTTATTTGAATGTCCATGAAGgttcgaatga ... gttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAG
tctaattgtatgactgccctaaaatgaagttactcatttcttgctgttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGCATCAATGACTGTGACAGATG
ccctaaa putative branch site (score: 255)
taaaatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgaatgactgtttccccttgtattgtctcagttcatctaattgtatgactgccctaaaatgaagttactcatttcttgctgttgaaccagGTCCTCATCTAATTAGCTTCAGACCTTCTGCTCGAAATGTACCGCTGCAAGCATCAATGACTGTGACAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG