Sequence
atgc intronic sequence ATGC exonic sequencegttagctgtgactttcactccctatttttttggacaaaaactttcagcccttaaaaaacttcttgtgaaaccatttttttaacttagtcgatttgacagGACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTAACAAGGCTTGTTATGGCTTCACATTCACCATCTGTGTTTCATCCATACATCAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G168629_T04 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 3'ss of exon 13
gttagctgtgactttcactccctatttttttggacaaaaactttcagcccttaaaaaacttcttgtgaaaccatttttttaacttagtcgatttgacagGACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTAACAAGGCTTGTTATGGCTTCACATTCACCATCTGTGTTTCATCCATACATCAAG
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---------gttggtgattcccattttgcttaaaatattatgtgcaggacttcta---cttgttgctaacttgttttctt-----------tttcatagGATAAGTCATCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTTACAAGACTTGTTATGGCTTCACATTCCCCAGCTGTGTTTCATCCATACATACAG
upper sequence: GRMZM2G168629_T04 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os02g07340.1 (Oryza sativa), 3'ss of exon 9
gttagctgtgactttcactccctatttttttggacaaaaactttcagcccttaaaaaacttcttgtgaaaccatt-----tttttaacttagt--cgatttgacagGACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTAACAAGGCTTGTTATGGCTTCACATTCACCATCTGTGTTTCATCCATACATCAAG
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-----ctgggattgagaacgctttgaatgttggtgattcccattttgctaa-aaaagattatgtgcaggacttctacttgttgctaacttgttttctttttcatagGATAAGTCATCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTTACAAGACTTGTTATGGCTTCACATTCCCCAGCTGTGTTTCATCCATACATACAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32859371|gb|CD999052.1|CD999052EST: ATTTCGGGTCACTTGTTCCTGGGATTGAGAAGGCTTTGAAT GACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTAACAAGG
genomic: ATTTCGGGTCACTTGTTCCTGGGATTGAGAAGGCTTTGAATgttagctgtg ... gatttgacagGACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTAACAAGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cagcccttaaaaaacttcttgtgaaaccatttttttaacttagtcgatttgacagGACAAGTCTTCTACCTCCAACCTGAAGATTGAAGCCCTTGTATTAACAAGGCTTGTTATGGCTTCACATTCACCATCTGTGTTTCATCCATACATCAAG
ttttaac putative branch site (score: 2)
atttttttaacttagt TA-rich tract