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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcggctcttgaaaacagcaataaagaactaaattcaaatccaaaaccagtttgaacctactttctcttgctgttgatccaatacctcgttttcttggttgacagTGACGATGTGACATTTGCCCTCAAGGAATCCCCAGATCTTCCTTGGCTATCCAAGTACTTGTGAGGTTCATATTACATTAACCATTAATTCCTGGCGTTC

Basic information

species Zea mays
transcript GRMZM2G168249_T03
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168249_T02 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os06g08790.1 (Oryza sativa), 3'ss of exon 15
gtcggctcttgaaaacagcaataaagaactaaattcaaatccaaaaccagtttgaacctactttctcttgctg--ttgatccaatacctcgttttcttggttgacagTGACGATGTGACATTTGCCCTCAAGGAATCCCCAGATCTTCCTTGGCTATCCAAGTACTTGTGAGGTTCATA-TTACATTAACCATTAATTCCTGGCGTTC
          |   | | |  |     | |  |     ||  |||   | | || ||||  ||| || ||      ||  |  ||   |  ||||||||  || |||||||||||| || |||||||| ||||||||||||||| |||| ||| | ||||||||| ||||| ||| | | || ||       |   ||||  || || 
-------tgagcggagaacttttggttaatctagctggatgaaaacttaatatgcacctcttttatcatgtaaaactgtactgatgattatttttcttgtctggcagTGACGATGTAACTTTTGCCCTGAAGGAATCCCCAGATATTCCATGGTTGTCCAAGTACCTGTGAAGTTTACACTTGCAGCGGTTGTACTTTCCCAGCATT-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaacctactttctcttgctgttgatccaatacctcgttttcttggttgacagTGACGATGTGACATTTGCCCTCAAGGAATCCCCAGATCTTCCTTGGCTATCCAAGTACTTGTGAGGTTCATATTACATTAACCATTAATTCCTGGCGTTC
                     tgttgat  putative branch site (score: 4)
                                tacctcgttttctt  putative PPT
                                       ttttctt  TA-rich tract