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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcttcttgcattggcatgttaggctgtaaaagaagagttttcactgcagctactaatactgcaaacttatgcagGTGGAGAAAGCACTGGAATAGATGTCAATGGAAATTCTTATGATCTGAGCACAAAGTTGCTTCATTTGGCTTGGCACCCATCTGAAAATCTAATTGCATG

Basic information

species Zea mays
transcript GRMZM2G164185_T02
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164185_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 3'ss of exon 13
gttagcttcttgcattg--gcatgttaggctgtaaaagaagagttttcactgcagctactaatactgcaaacttatgcagGTGGAGAAAGCACTGGAATAGATGTCAATGGAAATTCTTATGATCTGAGCACAAAGTTGCTTCATTTGGCTTGGCACCCATCTGAAAATCTAATTGCATG
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gttaccttcatgatgtgtagcatgtttaactttgtagaagc--tcgtcatttcaactactaattttgaatccttatgcagGTGCTGAAAGCACCGGAATAGAGGCCAATGGAAATTCCTACGATCTGAGCACAAAGTTGCTCCATCTCGCATGGCACCCATCCGAAAATTTAATTGCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33092481|gb|CF052475.1|CF052475
EST:     CACTAGAGCTACCAGATCTTTTAGTTCTCTGACAAGGGCAGTTAGACGAG                         GTGGAGAAAGCACTGGAATAGATGTCAATGGAAATTCTTATGATCTGAGCA
genomic: CACTAGAGCTACCAGATCCCTAAGTTCTCTGACAAGGGCAGTTAGACGAGgttagcttct ... acttatgcagGTGGAGAAAGCACTGGAATAGATGTCAATGGAAATTCTTATGATCTGAGCA
EST: gi|91057148|gb|EB167566.1|EB167566
EST:     CACTAGAGCTACCAGATCCCTAAGTTCTCTGACAAGGGCAGTTAGACGAG                         GTGGAGAAAGCACTGGAATAGATGTCAATGGAAATTCTTATGATC
genomic: CACTAGAGCTACCAGATCCCTAAGTTCTCTGACAAGGGCAGTTAGACGAGgttagcttct ... acttatgcagGTGGAGAAAGCACTGGAATAGATGTCAATGGAAATTCTTATGATC
EST: gi|71425474|gb|DR806698.1|DR806698
EST:     CACTAGAGCTACCAGATCCCTAAGTTCTCTGACAAGGGCAGTTAGACGAG                         GTGGAGAAAGCACTGGAATAGATGTCAATGGAAATTCTTATGATCTGAGCA
genomic: CACTAGAGCTACCAGATCCCTAAGTTCTCTGACAAGGGCAGTTAGACGAGgttagcttct ... acttatgcagGTGGAGAAAGCACTGGAATAGATGTCAATGGAAATTCTTATGATCTGAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggctgtaaaagaagagttttcactgcagctactaatactgcaaacttatgcagGTGGAGAAAGCACTGGAATAGATGTCAATGGAAATTCTTATGATCTGAGCACAAAGTTGCTTCATTTGGCTTGGCACCCATCTGAAAATCTAATTGCATG
                               tactaat  putative branch site (score: 1)
       taaaagaa  TA-rich tract