1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tgcatctattttccagccaaacacgtgtctgtcaacagaacacaatctaagcagcatgatccataatattttaagtaatgttcaacttgtcatgtggcagGATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAACATGGTTTTGTTGATTTTACTCGGAGCGGTGGAATGAGCCAACCGAAGC
species | Zea mays |
transcript | GRMZM2G163658_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAG GATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAAEST: gi|32857873|gb|CD997554.1|CD997554
genomic: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAGgtaaaataac ... catgtggcagGATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAA
EST: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAG GATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAAEST: gi|211437914|gb|FL449185.1|FL449185
genomic: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAGgtaaaataac ... catgtggcagGATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAA
EST: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAG GATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAAEST: gi|60354226|gb|DN221199.1|DN221199
genomic: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAGgtaaaataac ... catgtggcagGATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAA
EST: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAG GATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAAEST: gi|60353270|gb|DN220243.1|DN220243
genomic: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAGgtaaaataac ... catgtggcagGATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAA
EST: ACTGAAGAAGATGCTCAG GATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAAEST: gi|88752654|gb|DY536795.1|DY536795
genomic: ACTGAAGAAGATGCTCAGgtaaaataac ... catgtggcagGATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAA
EST: CTCGTGCTCGCGTGGATTTAAGAGATGAAGTGACTGAAGAAGATGCTCAG GATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAAEST: gi|32857853|gb|CD997534.1|CD997534
genomic: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAGgtaaaataac ... catgtggcagGATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAA
EST: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAG GATGGTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAAEST: gi|71446147|gb|DR827197.1|DR827197
genomic: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAGgtaaaataac ... catgtggcagGATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAA
EST: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAG GATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAAEST: gi|211437915|gb|FL449186.1|FL449186
genomic: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAGgtaaaataac ... catgtggcagGATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAA
EST: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAG GATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAA
genomic: CTCGTGCTCGCGTGGATCTAAGAGATGAAGTGACTGAAGAAGATGCTCAGgtaaaataac ... catgtggcagGATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAA
tctaagcagcatgatccataatattttaagtaatgttcaacttgtcatgtggcagGATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAACATGGTTTTGTTGATTTTACTCGGAGCGGTGGAATGAGCCAACCGAAGC
ataatattttaagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatctattttccagccaaacacgtgtctgtcaacagaacacaatctaagcagcatgatccataatattttaagtaatgttcaacttgtcatgtggcagGATGTTGTCGATATCATGAAAGAATCTCTGTATGACAAATATGTTGATGAACATGGTTTTGTTGATTTTACTCGGAGCGGTGGAATGAGCCAACCGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
tgcatct
- - - - - - - - ccaaaca
- - - - - - - - - - - - - - - - caacaga
- - - - - - - - - - - - - - - - - - - -acacaat
- - - - - - - - - - - - - - - - - - - - - - - - - gcagcat