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gtatcgcctgcaccttgctgggaaatcatgtttttagtaattcgaatcattatgttggtttcgtatattttctgtatccaaaacaataacctgaaacactacgaagtatatgatcctagcacatttctgaacgaattaatctgtttttaaccttgctttgacttgggtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGAAGAAGAAGAAAAGCAAG
species | Zea mays |
transcript | GRMZM2G162461_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|8102787|gb|AW927468.1|AW927468
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|32870569|gb|CF010251.1|CF010251
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|7135744|gb|AW498243.1|AW498243
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG GCCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|32870385|gb|CF010067.1|CF010067
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|32870542|gb|CF010224.1|CF010224
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|6918395|gb|AW399925.1|AW399925
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|32870512|gb|CF010194.1|CF010194
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCCCTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATCCATTGAGEST: gi|32870274|gb|CF009956.1|CF009956
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|8102786|gb|AW927467.1|AW927467
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|32870513|gb|CF010195.1|CF010195
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|32870386|gb|CF010068.1|CF010068
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|32870675|gb|CF010357.1|CF010357
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|21390916|gb|BQ528965.1|BQ528965
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: GAAGAGGAGC-TGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|32870275|gb|CF009957.1|CF009957
genomic: GAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|21390754|gb|BQ528803.1|BQ528803
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|91050815|gb|EB161233.1|EB161233
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|6918678|gb|AW400208.1|AW400208
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|14255699|gb|BG878607.1|BG878607
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|32870497|gb|CF010179.1|CF010179
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATCCATTGAGEST: gi|14311611|gb|BG901366.1|BG901366
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: TCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|71422239|gb|DR805663.1|DR805663
genomic: TCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|78091380|gb|DV519754.1|DV519754
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTGGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|7137803|gb|AW499278.1|AW499278
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|211223043|gb|FL464247.1|FL464247
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|32869242|gb|CF008924.1|CF008924
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|8382999|gb|BE056047.1|BE056047
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGEST: gi|71422238|gb|DR805662.1|DR805662
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
EST: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAG ACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
genomic: CTGTCTCCCGCGTTAGTGCACTGGAAGAGGAGCTTGCAGCTACAAAGAAGgtatcgcctg ... gtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAG
catttctgaacgaattaatctgtttttaaccttgctttgacttgggtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGAAGAAGAAGAAAAGCAAG
tctttgc CT-rich tract
aattaatctgttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcgcctgcaccttgctgggaaatcatgtttttagtaattcgaatcattatgttggtttcgtatattttctgtatccaaaacaataacctgaaacactacgaagtatatgatcctagcacatttctgaacgaattaatctgtttttaaccttgctttgacttgggtctttgcagACCTTGCAGGAGACTCTTGAGCGTCAGTTGGAGATCGTTGCATACATTGAGAAGAAGAAGAAAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG