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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagttcatgtttctttgcaagagtaatctagtgaatattctgatgtgcagtattattccagggtctgtcatcccaatccactgaatattctactctcttgtcatcggctattcgtttcagGATAACATTGCACAAGACTCTGACTTGTACAACATCTTAAGAATAGTGTCCTTGGTTGGTGTCGTG

Basic information

species Zea mays
transcript GRMZM2G160430_T01
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5296357|gb|AI783127.1|AI783127
EST:     CTGGGATGACCCTAAGCCTTCTGGCAGTTGTTGTTGTATTTTGCATCAAG                         GATAACATTGCACAAGACTCTGACTTGTACAACATCTTAAGAATAGTGTCC
genomic: CTGGGATGACCCTAAGCCTTCTGGCAGTTGCTGTTGTATTTTGCATCAAGgtaaagttca ... ttcgtttcagGATAACATTGCACAAGACTCTGACTTGTACAACATCTTAAGAATAGTGTCC
EST: gi|32832825|gb|CD972503.1|CD972503
EST:     CTGGGATGACCCTAAGCCTTCTGGCAGTTGCTGTTGTATTTTGCATCAAG                         GATAACATTGCACAAGACTCTGACTTGT
genomic: CTGGGATGACCCTAAGCCTTCTGGCAGTTGCTGTTGTATTTTGCATCAAGgtaaagttca ... ttcgtttcagGATAACATTGCACAAGACTCTGACTTGT
EST: gi|101387701|gb|EB815865.1|EB815865
EST:     CTGGGATGACCCTAAGCCTTCTGGCAGTTGCTGTTGTATTTTGCATCAAG                         GATAACATTGCACAAGACTCTGACTTGTACAACATCTTAAGAATGGTGTCC
genomic: CTGGGATGACCCTAAGCCTTCTGGCAGTTGCTGTTGTATTTTGCATCAAGgtaaagttca ... ttcgtttcagGATAACATTGCACAAGACTCTGACTTGTACAACATCTTAAGAATAGTGTCC
EST: gi|37385615|gb|CF629958.1|CF629958
EST:     CTGGGATGACCCTAAGCCTTCTGGCAGTTGCTGTTGTATTTTGCATCAAG                         GATAACATTGCACAAGACTCTGACTTGTACAACATCTTAAGAATGGTGTCC
genomic: CTGGGATGACCCTAAGCCTTCTGGCAGTTGCTGTTGTATTTTGCATCAAGgtaaagttca ... ttcgtttcagGATAACATTGCACAAGACTCTGACTTGTACAACATCTTAAGAATAGTGTCC
EST: gi|32927095|gb|CF031907.1|CF031907
EST:     CTGGGATGACCCTAAGCCTTCTGGCAGTTGCTGTTGTATTTTGCATCAAG                         GATAACATTGCACAAGACTCTGACTTGT
genomic: CTGGGATGACCCTAAGCCTTCTGGCAGTTGCTGTTGTATTTTGCATCAAGgtaaagttca ... ttcgtttcagGATAACATTGCACAAGACTCTGACTTGT
EST: gi|148950293|gb|EC895852.2|EC895852
EST:     CTGGGATGACCCTAAGCCTTCTGGCAGTTGCTGTTGTATTTTGCATCAAG                         GATAACATTGCACAAGACTCTGACTTGTACAACATCTTAAGAATAGTGTCC
genomic: CTGGGATGACCCTAAGCCTTCTGGCAGTTGCTGTTGTATTTTGCATCAAGgtaaagttca ... ttcgtttcagGATAACATTGCACAAGACTCTGACTTGTACAACATCTTAAGAATAGTGTCC
EST: gi|5846979|gb|AW000058.1|AW000058
EST:     CTGGGATGACCCTAAGCCTTCTGGCAGTTGTTGTTGTATTTTGCATCAAG                         GATAACATTGCACAAGACTCTGACTTGTACAACATCTTAAGAATAGTGTCC
genomic: CTGGGATGACCCTAAGCCTTCTGGCAGTTGCTGTTGTATTTTGCATCAAGgtaaagttca ... ttcgtttcagGATAACATTGCACAAGACTCTGACTTGTACAACATCTTAAGAATAGTGTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcatcccaatccactgaatattctactctcttgtcatcggctattcgtttcagGATAACATTGCACAAGACTCTGACTTGTACAACATCTTAAGAATAGTGTCCTTGGTTGGTGTCGTG
                                             ttcgtttc  CT-rich tract
                  aatattcta  TA-rich tract