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gtaattgcagccctagtatatatgttttggaatctgtcagcaaggtaagaatatttttgatgggaacacattgattgttgttaaaacattgcctgtacttccagGAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTATATGCAGTGGAAGAACATTCCATGCACCAAGTGAGATTTCATTCTAGGC
species | Zea mays |
transcript | GRMZM2G155729_T03 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAG GAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTAEST: gi|148942819|gb|EC887852.2|EC887852
genomic: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAGgtaattgcag ... gtacttccagGAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTA
EST: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAG GAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTAEST: gi|211475229|gb|FL446078.1|FL446078
genomic: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAGgtaattgcag ... gtacttccagGAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTA
EST: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAG GAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTAEST: gi|40303703|gb|CK348090.1|CK348090
genomic: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAGgtaattgcag ... gtacttccagGAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTA
EST: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAG GAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTA
genomic: GGTTGCTGCAGGTGGCTTCTTGACTCATTCTGTGCCCTTGTATATGACAGgtaattgcag ... gtacttccagGAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTA
aatatttttgatgggaacacattgattgttgttaaaacattgcctgtacttccagGAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTATATGCAGTGGAAGAACATTCCATGCACCAAGTGAGATTTCATTCTAGGC
cattgat putative branch site (score: 4)
tacttcc putative PPT
ttaaaacatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattgcagccctagtatatatgttttggaatctgtcagcaaggtaagaatatttttgatgggaacacattgattgttgttaaaacattgcctgtacttccagGAGTTGAAGTTTCTCCGCTTTGCTCTTATGCTGGAGAGAATCTAGAAGCTATATGCAGTGGAAGAACATTCCATGCACCAAGTGAGATTTCATTCTAGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC