Sequence
atgc intronic sequence ATGC exonic sequence...tgctcttctgccacacttgattgatttatatcatgtttttcattttacatggtttcatattttgcatcctaccttcctgatttactgttcttttgtgcagTGGCAATGCCCAATATGTTTAAAGAATTACTCTCTCGAGAACTTGATGATCGATCCTTATTTCAACCGGATTACATCTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G155123_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os05g03430.3 (Oryza sativa), 3'ss of exon 9
-----------------------------------------------------------------tgctcttctgccacacttgattgat-ttatatcatgtttttcattttacatggtttcatattttgcatcctaccttcctgatttactgttcttttgtgcagTGGCAATGCCCAATATGTTTAAAGAATTACTCTCTCGAGAACTTGATGATCGATCCTTATTTCAACCGGATTACATCTTTG
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gttagatcttgtgttccctgatgctcatccttcagatacatgtgtgttcatccaggaaagagttacttttttctggagctcacaacccaccttttgacatgttgatgctttcatat--tttccttttatatcctctgattgctcttttctct-tgtttctatacagTGGCAATGTCCAATATGTTTAAAGAATTACTCTCTTGAGAGCTTGATGATTGATCCTTACTTCAATAGGATTACTTCTCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30306927|gb|CD001600.1|CD001600EST: GCTGTTTTGATCTTGAAACTTTTGTGGAATTGAATCAACGCTCACGCAAG TGGCAATGCCCAATATGTTTAAAGAATTACTCTCTCGAGAACTTGATGATC
genomic: GCTGTTTTGATCTTGAAACTTTTGTGGAATTGAATCAACGCTCACGCAAGgtcagattgt ... ttttgtgcagTGGCAATGCCCAATATGTTTAAAGAATTACTCTCTCGAGAACTTGATGATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tacatggtttcatattttgcatcctaccttcctgatttactgttcttttgtgcagTGGCAATGCCCAATATGTTTAAAGAATTACTCTCTCGAGAACTTGATGATCGATCCTTATTTCAACCGGATTACATCTTTG
tcctgat putative branch site (score: 3)
tttactgttctttt CT-rich tract
tttcatatttt TA-rich tract