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gtgaataatcaaatatatggtgtggcaaattatttctaaaaaaggagattgttgatggtttcaacttcaagtgatcgtttatgtgtttcagATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTCGAGGAACTCTGTTGACATCAACTGTCTCAGCTCAGCTTTGTCAGGATAT
species | Zea mays |
transcript | GRMZM2G154621_T03 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAG ATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTCEST: gi|78027102|gb|DV495489.1|DV495489
genomic: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAGgtgaataatc ... tgtgtttcagATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
EST: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAG ATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTCEST: gi|5668534|gb|AI932049.1|AI932049
genomic: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAGgtgaataatc ... tgtgtttcagATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
EST: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAG ATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTCEST: gi|5456272|gb|AI833962.1|AI833962
genomic: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAGgtgaataatc ... tgtgtttcagATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
EST: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAG ATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTCEST: gi|211537951|gb|FL453879.1|FL453879
genomic: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAGgtgaataatc ... tgtgtttcagATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
EST: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAMCCGTGACATTGCAG ATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
genomic: TTTTCTCTGGGTCAGAGACTCTGAAATATATGAGAACCGTGACATTGCAGgtgaataatc ... tgtgtttcagATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTC
taaaaaaggagattgttgatggtttcaacttcaagtgatcgtttatgtgtttcagATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTCGAGGAACTCTGTTGACATCAACTGTCTCAGCTCAGCTTTGTCAGGATAT
tttatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaataatcaaatatatggtgtggcaaattatttctaaaaaaggagattgttgatggtttcaacttcaagtgatcgtttatgtgtttcagATGAGATTTCAGAACAAAAGGATGATATGCTACAGGCTGAGGAAGGCTTTCGAGGAACTCTGTTGACATCAACTGTCTCAGCTCAGCTTTGTCAGGATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT