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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attaccatagtaaagtaattaagctaggctttacttgcatacaccatggagtccttaacctgttttctttttcttgttttttcattctttctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTTGGGATCAGCAACGTGTATCTGGGATTTGCATCAGTATGTGCCCTTGCAG

Basic information

species Zea mays
transcript GRMZM2G153704_T02
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148981334|gb|EE027588.2|EE027588
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|101389575|gb|EB816720.1|EB816720
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|67035008|gb|CO463541.1|CO463541
EST:     CCTCGAGATTAAGGGCCAAGGCTGTTGCATTATCTCCANGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGCCG-GAGCA
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCA
EST: gi|211050165|gb|FL124866.1|FL124866
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTCAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|211050168|gb|FL124869.1|FL124869
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|149071544|gb|EE159937.2|EE159937
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|60355926|gb|DN222899.1|DN222899
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|149109615|gb|EE293402.2|EE293402
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|116826239|gb|EC870015.1|EC870015
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAA
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAA
EST: gi|149055221|gb|EE156146.2|EE156146
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|67011667|gb|CO440416.1|CO440416
EST:     CCTCGAGAATAAGGGCCAAGGCTGTTGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|211050172|gb|FL124873.1|FL124873
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTCAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|211050170|gb|FL124871.1|FL124871
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTCAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|60351782|gb|DN218755.1|DN218755
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|33092425|gb|CF052419.1|CF052419
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|60401429|gb|DN234236.1|DN234236
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|211106867|gb|FL216747.1|FL216747
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTCAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|94472602|gb|EB701560.1|EB701560
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|60353755|gb|DN220728.1|DN220728
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|60358931|gb|DN225904.1|DN225904
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|78075827|gb|DV504261.1|DV504261
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|60355312|gb|DN222285.1|DN222285
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|18963572|gb|BM660510.1|BM660510
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|148996906|gb|EE035710.2|EE035710
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
EST: gi|110951781|gb|EE171833.1|EE171833
EST:     CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGG                         GTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT
genomic: CCTCGAGAATAAGGGCCAAGGCTGTCGCATTATCTCTAGGCATGCACTGGgtgagtcatg ... ctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggagtccttaacctgttttctttttcttgttttttcattctttctttcttcagGTATCTAACTTTTTCATTGGCCTGTACTTCCTGAGTGTCGTGAGCAAGTTTGGGATCAGCAACGTGTATCTGGGATTTGCATCAGTATGTGCCCTTGCAG
       ccttaac  putative branch site (score: 3)
             cctgttttctttttct  CT-rich tract
                      tttttcttgtttttt  TA-rich tract