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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

atgccatcgccctaggaactcgtgtgcaagtgagtgtcgctgataatctattttttattgagcattcatctttgttggattctgtcatactcgtagctagcagttcatcttgaacctgtacataatcgtttctgtatttgcagGACATCAAGTTTGCTGTTCACGCACACCCTACATTGTCTGAGGTCCTGGATGAACTCTTCAAAGCAGCCAAG

Basic information

species Zea mays
transcript GRMZM2G152958_T02
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152958_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 3'ss of exon 13
atgccatcgccctaggaactcgtgtgcaagtgagtgtcgctgataatctattttttattgagcattcatctttgttggattctgtcatactcgtagctagcagttcatcttgaacctgtacataatcgtttctgtatttgcagGACATCAAGTTTGCTGTTCACGCACACCCTACATTGTCTGAGGTCCTGGATGAACTCTTCAAAGCAGCCAAG
                             |||||| |   ||||| | | ||| ||     |  ||| |||||||| |  | |               ||||||  | ||||||  || |||| |||  | |       |||||||||||||||||||||||| |||||||| |||||||| ||||| ||||| |||||||| ||||||||||||
-----------------------------gtgagtataa-tgatattatttttcttcacttg-gttcgtctttgttagccttt--------------cagcagtataacttgaatttg-acatgatcactcccac-cacgcagGACATCAAGTTTGCTGTTCATGCACACCCAACATTGTCCGAGGTGCTGGACGAACTCTTTAAAGCAGCCAAG

upper sequence: GRMZM2G152958_T02 (Zea mays), 3'ss of exon 13
lower sequence: AT3G16950.1 (Arabidopsis thaliana), 3'ss of exon 13
----------------atgccatcgccctaggaactcgtgtgcaag--tgagtgtcgctgataatctattttttattgag----cattcatctttgttg--gattctgtcatactcgtagctagcagtt-catcttgaacctgtacataatc-gtttctgtatttgcagGACATCAAGTTTGCTGTTCACGCACACCCTACATTGTCTGAGGTCCTGGATGAACTCTTCAAAGCAGCCAAG
                  |  ||  |  | | | || |   | |    |   | | | | |||  |||      | | |      || |||  ||  ||  ||  ||   | || | |   | | |  |   |||||| ||  | |||  |    |  | | | |||||||||| || || || ||||| ||||| || ||| | ||||||||||| || ||||| |||||||||||||||
gtaggatttcattgattagtgattactattgaatctagctcgtagcctttgatattgataatatcctacagcgaaatcaagtcatatacatagttcctgctgaaactactaaacgcattatttgtatctgtttcttgatcccctgcatgttttaatggtatctctgcagGACATAAAATTGGCAGTTCATGCACATCCAACACTCTCTGAGGTCCTCGACGAACTGTTCAAAGCAGCCAAG

upper sequence: GRMZM2G152958_T02 (Zea mays), 3'ss of exon 13
lower sequence: Vv14s0060g01330.t01 (Vitis vinifera), 3'ss of exon 13
------atgccatcgccctaggaactcgtg-----tgcaagtgagtgtcgctgataatctattt---tttattgagc-attcatctttgttggattctgtcatactcgtagc-tagcagtt--catcttgaacctgtacataatcgttt-----ctgtat---ttgcagGACATCAAGTTTGCTGTTCACGCACACCCTACATTGTCTGAGGTCCTGGATGAACTCTTCAAAGCAGCCAAG
       |    |  | | |    | | |      ||||||  |||    |  | |  || |||   | ||| |    ||||||  |  || || ||  |   | ||  |   ||   |||   || ||    |  | | | ||| ||      | ||      |||||||||| |||||||||||||| ||||| || || ||||| ||||| || || |||||||||||| | || |||
gttttttttttttttctccatttgcccatacaatttgcaagacagtaataccaa-atcctctttacatctatggcatgattcattatgttttgactc-ataccattcaaaatataatggttgctattttccttccattcgtcatctttcacaacccgtgcaccctgcagGACATAAAGTTTGCTGTTCATGCACATCCAACCTTGTCCGAGGTGCTTGACGAACTCTTCAAATCTGCTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcgtagctagcagttcatcttgaacctgtacataatcgtttctgtatttgcagGACATCAAGTTTGCTGTTCACGCACACCCTACATTGTCTGAGGTCCTGGATGAACTCTTCAAAGCAGCCAAG
                                        tttctgt  CT-rich tract
                              tacataat  TA-rich tract