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...aaaatgaataagccttaaagtgtctattattttctaaatgaaattcgactatgaaaaccttttggatatgtggcaccactcgaatcactacatcctgcagCTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCACCCTTGCAAGAGAAGGACCAGTCGAGAGGCAACTCTGGGGGAGGAAGATT
species | Zea mays |
transcript | GRMZM2G149520_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAG CTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCACEST: gi|24768752|gb|CA403881.1|CA403881
genomic: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAGgtataatggt ... catcctgcagCTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCAC
EST: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAG CTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCACEST: gi|101394193|gb|EB819031.1|EB819031
genomic: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAGgtataatggt ... catcctgcagCTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCAC
EST: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAG CTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCACEST: gi|5108424|gb|AI740137.1|AI740137
genomic: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAGgtataatggt ... catcctgcagCTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCAC
EST: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAG CTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCACEST: gi|78026164|gb|DV494551.1|DV494551
genomic: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAGgtataatggt ... catcctgcagCTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCAC
EST: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAG CTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCACEST: gi|24769058|gb|CA404187.1|CA404187
genomic: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAGgtataatggt ... catcctgcagCTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCAC
EST: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAG CTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCACEST: gi|32835099|gb|CD974777.1|CD974777
genomic: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAGgtataatggt ... catcctgcagCTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCAC
EST: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAG CTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCACEST: gi|24769377|gb|CA404506.1|CA404506
genomic: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAGgtataatggt ... catcctgcagCTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCAC
EST: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAG CTTCGGAGAGTGCCGCACAGGTGCCAATTGATGAAGTCAAGCAACTGCCACEST: gi|24766670|gb|CA401817.1|CA401817
genomic: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAGgtataatggt ... catcctgcagCTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCAC
EST: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAG CTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCACEST: gi|71765305|gb|DR963242.1|DR963242
genomic: AGGAGTTGTATTTGATGTTCCTGCAGCAGATGTTGAAGATTACATTCAAGgtataatggt ... catcctgcagCTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCAC
EST: TTGAAGATTACATTCAAG CTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCAC
genomic: TTGAAGATTACATTCAAGgtataatggt ... catcctgcagCTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCAC
cgactatgaaaaccttttggatatgtggcaccactcgaatcactacatcctgcagCTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCACCCTTGCAAGAGAAGGACCAGTCGAGAGGCAACTCTGGGGGAGGAAGATT
atgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatgaataagccttaaagtgtctattattttctaaatgaaattcgactatgaaaaccttttggatatgtggcaccactcgaatcactacatcctgcagCTTCGGAGAGTGCCGCACAGGTGACAATTGATGAAGTCAAGCAACTGCCACCCTTGCAAGAGAAGGACCAGTCGAGAGGCAACTCTGGGGGAGGAAGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - -aaatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccact