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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttatagttgagagcttgacgtgaataaatttagctgtatatgcttggataactaatagtttggtcccgaggaaccttatattttaaaactaaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGGTGATCCAATATTTCTTTCCCTTCGCCTCTCTTCAGACTCCAACTAGACCTTCAATTCA

Basic information

species Zea mays
transcript GRMZM2G147500_T05
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74237135|gb|DT645049.1|DT645049
EST:     TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAG                         GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGGTGATCCAAT
genomic: TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAGgtttgtgcat ... aaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGGTGATCCAAT
EST: gi|74237134|gb|DT645048.1|DT645048
EST:     TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAG                         GCCTGCATCATGTCCAAGCACTTCAAGTTTGATAAGCCAAGGTGATCCAAT
genomic: TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAGgtttgtgcat ... aaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGGTGATCCAAT
EST: gi|211359665|gb|FL110324.1|FL110324
EST:     TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAG                         GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGGTGATCCAAT
genomic: TTGAGCTTGAAGCTCAACTGGTTGAAGCAAGAAGCATCATCCAAGAGCAGgtttgtgcat ... aaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGGTGATCCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggataactaatagtttggtcccgaggaaccttatattttaaaactaaatttgcagGCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGGTGATCCAATATTTCTTTCCCTTCGCCTCTCTTCAGACTCCAACTAGACCTTCAATTCA
                                         aactaaa  putative branch site (score: 2)
                          aaccttatattttaaa  TA-rich tract