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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatccaatatttctttcccttcgcctctcttcagactccaactagaccttcaattcatggattccgtcacagtggcagGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGTGTAAAAGCATGTCTGTAGCAAGGATATATCTGTTCTGCAAGACCTCCTGATTTTA

Basic information

species Zea mays
transcript GRMZM2G147500_T02
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71427991|gb|DR809041.1|DR809041
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         T
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... acagtggcag-
EST: gi|71427991|gb|DR809041.1|DR809041
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         T
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... acagtggcag-
EST: gi|31405728|gb|CD484460.1|CD484460
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         T
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... acagtggcag-
EST: gi|31405728|gb|CD484460.1|CD484460
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         T
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... acagtggcag-
EST: gi|60342233|gb|DN209206.1|DN209206
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         T
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... acagtggcag-
EST: gi|60342233|gb|DN209206.1|DN209206
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         T
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... acagtggcag-
EST: gi|32943705|gb|CF048524.1|CF048524
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         T
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... acagtggcag-
EST: gi|32943705|gb|CF048524.1|CF048524
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         T
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... acagtggcag-
EST: gi|60350197|gb|DN217170.1|DN217170
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         GAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGTGTAAAA
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... acagtggcagGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGTGTAAAA
EST: gi|32911044|gb|CF015856.1|CF015856
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         T
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... acagtggcag-
EST: gi|32911044|gb|CF015856.1|CF015856
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         T
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... acagtggcag-
EST: gi|91872286|gb|EB402243.1|EB402243
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAG                         GAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGTGTAAAA
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... acagtggcagGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGTGTAAAA
EST: gi|148955451|gb|EC901042.2|EC901042
EST:     GCCTGCATCATGTCCAAGCACTTCAAGTTTGATAAGCCAAG                         GAGGCATAGCGGTTTGGATGGCGAGCGTGAGGCATCTGCCGAGGTGTAAAA
genomic: GCCTGCATCATGTCCAAGCACTTCAAGTCTGATAAGCCAAGgtgatccaat ... acagtggcagGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGTGTAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctctcttcagactccaactagaccttcaattcatggattccgtcacagtggcagGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGTGTAAAAGCATGTCTGTAGCAAGGATATATCTGTTCTGCAAGACCTCCTGATTTTA
                         ttcaatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgatccaatatttctttcccttcgcctctcttcagactccaactagaccttcaattcatggattccgtcacagtggcagGAGGCATAGCGGTCTGGATGGCGAGCGTGAGGCATCTGCCGAGGTGTAAAAGCATGTCTGTAGCAAGGATATATCTGTTCTGCAAGACCTCCTGATTTTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA