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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaggcagctgctactagtaccgttttgttttgaacgggctgtggaagatatccatagactaatgctgccatatgaaaatttacagATAGTAGTGTCGCTTGGAGCAGGTCCATGGGACGCTCTGTATGGAGGAGGGAATACCCCGGCGTTCGTCTTGGCTTCGGTCTTCTCCCTGGCAGCAGGTG

Basic information

species Zea mays
transcript GRMZM2G145107_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145107_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os02g58080.1 (Oryza sativa), 3'ss of exon 13
gttaggcagctgctactag-taccgttttgttttgaacgggctgtg---gaagatatccatagactaatgctgccatatgaaaatttacagATAGTAGTGTCGCTTGGAGCAGGTCCATGGGACGCTCTGTATGGAGGAGGGAATACCCCGGCGTTCGTCTTGGCTTCGGTCTTCTCCCTGGCAGCAGGTG
|||||   | |  ||  |   |   | |  || |  | | |||||    |||||| ||  |   |   |  | |   || |   | | |||||||||||||| || ||||||||||||||||| ||||| | ||| ||||||||   ||| || |||| ||||||||| || ||||| || | ||| ||||
gttagcatgttcataagaaacaaaatgtatttctatatgtgctgtcactgaagatgtct-tgaccatttaatactccattattctgtgcagATAGTAGTGTCACTAGGAGCAGGTCCATGGGATGCTCTCTTTGGGGGAGGGAACGTCCCTGCTTTCGCCTTGGCTTCCGTTTTCTCACTAGGAGCTGGTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31359786|gb|CD444143.1|CD444143
EST:     GTTTGGCCACAGGAGTCCTAAATCTTGCTATCGTGGTTCCCCAG                         ATAGTAGTGTCGCTTGGAGCAGGTCCATGGGACGCTCTGTATGGAGGAGGG
genomic: GTTTGGCCACAGGAGTCCTAAATCTTGCTATCGTGGTTCCCCAGgttaggcagc ... aaatttacagATAGTAGTGTCGCTTGGAGCAGGTCCATGGGACGCTCTGTATGGAGGAGGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaacgggctgtggaagatatccatagactaatgctgccatatgaaaatttacagATAGTAGTGTCGCTTGGAGCAGGTCCATGGGACGCTCTGTATGGAGGAGGGAATACCCCGGCGTTCGTCTTGGCTTCGGTCTTCTCCCTGGCAGCAGGTG
                          gactaat  putative branch site (score: 2)
                                       atatgaaaatttaca  TA-rich tract