Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcttgatgctttggcatgttagtctgtaaaagaatcttcactgcggctactaatactgtcaaaccttacgcagGTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTATGATCTGAGCACAAAGTTGCTCCATTTGGCCTGGCACCCATCTGAAAATCTAATTGCTTG

Basic information

species Zea mays
transcript GRMZM2G142334_T01
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G142334_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os01g41630.1 (Oryza sativa), 3'ss of exon 13
gttagcttgatgctttg--gcatgtt--agtctgtaaaagaatcttcactgcggctactaatactgtcaaaccttacgcagGTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTATGATCTGAGCACAAAGTTGCTCCATTTGGCCTGGCACCCATCTGAAAATCTAATTGCTTG
|||| ||| ||| | ||  |||||||  | | |||| |||  || ||| | |  ||||||||  ||  || ||||| |||||||  || ||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||| | || ||||||||||| |||||| ||||||||||
gttaccttcatgatgtgtagcatgtttaactttgtagaagc-tcgtcatttcaactactaattttg--aatccttatgcagGTGCTGAAAGCACCGGAATAGAGGCCAATGGAAATTCCTACGATCTGAGCACAAAGTTGCTCCATCTCGCATGGCACCCATCCGAAAATTTAATTGCTTG

upper sequence: GRMZM2G142334_T02 (Zea mays), 3'ss of exon 13
lower sequence: Vv04s0008g00840.t01 (Vitis vinifera), 3'ss of exon 13
----------------------gttagcttgatgctttggcatgttagtctgtaaaagaatcttcactgcggc-tactaatactgtcaaacct-tacgcagGTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTATGATCTGAGCACAAAGTTGCTCCATTTGGCCTGGCACCCATCTGAAAATCTAATTGCTTG
                        ||| |   |   ||   |    | | |||| ||||  |   |    | | |  ||    |  ||   || |    |||   ||| ||  |||||   ||  | ||||||||  | | |||| | |  ||||||||||||||||| |||||||| ||| |||||||     | |||||
cgaatttcaattccactttgtgagtagatcattcaatttttagagcaat-tgtagaagacccagaaaactgacatgttagggattccatttctgtgaaaagGAACAGATAGTTCTGGAGCTGACACAAATGGAAACGCTTTTGATTTCATGACAAAGTTGCTCCATTTAGCCTGGCATCCAACTGAAAACTCCCTAGCTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120481038|gb|EH211133.1|EH211133
EST:     CTCTAGAGCTACCAGATCCCTAAGTACTCTGACAAGGGCCGTTAGACGAG                         GTGGAGAGAGCACTGTAATAGATGCCAATGGAAATTCCTATGATCTGAGCA
genomic: CTCTAGAGCTACCAGATCCCTAAGTACTCTGACAAGGGCCGTTAGACGAGgttagcttga ... ccttacgcagGTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTATGATCTGAGCA
EST: gi|67016408|gb|CO445157.1|CO445157
EST:     CTCTAGAGCTACCAGATCCCTAAGTACTCTGACAAGGGCCGTTAGACGAG                         GTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTTTGATCTGAGCA
genomic: CTCTAGAGCTACCAGATCCCTAAGTACTCTGACAAGGGCCGTTAGACGAGgttagcttga ... ccttacgcagGTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTATGATCTGAGCA
EST: gi|71417754|gb|DR804198.1|DR804198
EST:     CTCTAGAGCTACCAGATCCTTAAGTACTCTGACAAGGGCCGTTAGACGAG                         GTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTATGATCTGAGCA
genomic: CTCTAGAGCTACCAGATCCCTAAGTACTCTGACAAGGGCCGTTAGACGAGgttagcttga ... ccttacgcagGTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTATGATCTGAGCA
EST: gi|211530906|gb|FL193982.1|FL193982
EST:     CTCTAGAGCTACCAGATCCCTAAGTACTCTGACAAGGGCCGTTAGACGAG                         GTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTATGATCTGAGCA
genomic: CTCTAGAGCTACCAGATCCCTAAGTACTCTGACAAGGGCCGTTAGACGAGgttagcttga ... ccttacgcagGTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTATGATCTGAGCA
EST: gi|6012734|gb|AW062171.1|AW062171
EST:     CTCTAGAGCTACCAGATCCCTAAGTACTCTGACAAGGGCCGTTAGACGAG                         GTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTATGATCTGAGCA
genomic: CTCTAGAGCTACCAGATCCCTAAGTACTCTGACAAGGGCCGTTAGACGAGgttagcttga ... ccttacgcagGTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTATGATCTGAGCA
EST: gi|211530907|gb|FL193983.1|FL193983
EST:     CTCTAGAGCTACCAGATCCCTAAGTACTCTGACAAGGGCCGTTAGACGAG                         GTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTATGATCTGAGCA
genomic: CTCTAGAGCTACCAGATCCCTAAGTACTCTGACAAGGGCCGTTAGACGAGgttagcttga ... ccttacgcagGTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTATGATCTGAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtctgtaaaagaatcttcactgcggctactaatactgtcaaaccttacgcagGTGGAGAGAGCACTGGAATAGATGCCAATGGAAATTCCTATGATCTGAGCACAAAGTTGCTCCATTTGGCCTGGCACCCATCTGAAAATCTAATTGCTTG
        taaaagaat  TA-rich tract