1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...attaattttcttgaaagtcttatgtttgttgttgagagcataaataggagcaatgttacttgcttgttttagctgctgattctttctacataccatgtagGCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCCCCAAGCTTACATTCATCCATGGAGGGAAAGATGATTCAACATTGTTTGA
species | Zea mays |
transcript | GRMZM2G141735_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACT GCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCCEST: gi|71436216|gb|DR817266.1|DR817266
genomic: CTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACTgtaagtacat ... taccatgtagGCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCC
EST: ATTCCTCAACTGGTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACT GCCTTTTGAGAAAAACAATAAATGGAGTGAAGCAGGACAGATGTATAACCCEST: gi|76911766|gb|DV164421.1|DV164421
genomic: ATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACTgtaagtacat ... taccatgtagGCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCC
EST: CTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACT GCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCCEST: gi|74242908|gb|DT650822.1|DT650822
genomic: CTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACTgtaagtacat ... taccatgtagGCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCC
EST: CTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACT GCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCCEST: gi|211038924|gb|FL472335.1|FL472335
genomic: CTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACTgtaagtacat ... taccatgtagGCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCC
EST: CTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACT GCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCCEST: gi|60339195|gb|DN206168.1|DN206168
genomic: CTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACTgtaagtacat ... taccatgtagGCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCC
EST: CTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACT GCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCCEST: gi|14243861|gb|BG841626.2|BG841626
genomic: CTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACTgtaagtacat ... taccatgtagGCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCC
EST: CTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACT GCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCCEST: gi|110195680|gb|EC877577.1|EC877577
genomic: CTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACTgtaagtacat ... taccatgtagGCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCC
EST: CTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACT GCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCC
genomic: CTATTCCTCAACTGCTGATCCTTCAGTTCCTTTTCCTCCACCCCATGACTgtaagtacat ... taccatgtagGCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCC
aggagcaatgttacttgcttgttttagctgctgattctttctacataccatgtagGCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCCCCAAGCTTACATTCATCCATGGAGGGAAAGATGATTCAACATTGTTTGA
tgctgat putative branch site (score: 75)
ttgtttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attaattttcttgaaagtcttatgtttgttgttgagagcataaataggagcaatgttacttgcttgttttagctgctgattctttctacataccatgtagGCCTTTTGAGAAAAACAATAAATGGACTGAAGCAGGACAGATGTATAACCCCCAAGCTTACATTCATCCATGGAGGGAAAGATGATTCAACATTGTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - tttcttg
- - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - -aggagca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgctg